Bioinformatics Approaches for Fetal DNA Fraction Estimation in Noninvasive Prenatal Testing
Peng, Xianlu Laura, Jiang, Peiyong
Published in International journal of molecular sciences (20.02.2017)
Published in International journal of molecular sciences (20.02.2017)
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Journal Article
Purity Independent Subtyping of Tumors (PurIST), A Clinically Robust, Single-sample Classifier for Tumor Subtyping in Pancreatic Cancer
Rashid, Naim U, Peng, Xianlu L, Jin, Chong, Moffitt, Richard A, Volmar, Keith E, Belt, Brian A, Panni, Roheena Z, Nywening, Timothy M, Herrera, Silvia G, Moore, Kristin J, Hennessey, Sarah G, Morrison, Ashley B, Kawalerski, Ryan, Nayyar, Apoorve, Chang, Audrey E, Schmidt, Benjamin, Kim, Hong Jin, Linehan, David C, Yeh, Jen Jen
Published in Clinical cancer research (01.01.2020)
Published in Clinical cancer research (01.01.2020)
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Journal Article
MyoD- and FoxO3-mediated hotspot interaction orchestrates super-enhancer activity during myogenic differentiation
Peng, Xianlu L, So, Karl K, He, Liangqiang, Zhao, Yu, Zhou, Jiajian, Li, Yuying, Yao, Mingze, Xu, Bo, Zhang, Suyang, Yao, Hongjie, Hu, Ping, Sun, Hao, Wang, Huating
Published in Nucleic acids research (06.09.2017)
Published in Nucleic acids research (06.09.2017)
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Journal Article
Direct activation of human and mouse Oct4 genes using engineered TALE and Cas9 transcription factors
Hu, Jiabiao, Lei, Yong, Wong, Wing-Ki, Liu, Senquan, Lee, Kai-Chuen, He, Xiangjun, You, Wenxing, Zhou, Rui, Guo, Jun-Tao, Chen, Xiongfong, Peng, Xianlu, Sun, Hao, Huang, He, Zhao, Hui, Feng, Bo
Published in Nucleic acids research (01.04.2014)
Published in Nucleic acids research (01.04.2014)
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Journal Article
Tumor-intrinsic and Cancer-associated Fibroblast Subtypes Independently Predict Outcomes in Pancreatic Cancer
Lee, Jaewon J, Kearney, Joseph F, Trembath, Hannah E, Hariharan, Arthi, LaBella, Michelle E, Kharitonova, Elena V, Chan, Priscilla S, Morrison, Ashley B, Cliff, Ashley, Meyers, Michael O, Kim, Hong Jin, Rashid, Naim U, Peng, Xianlu L, Yeh, Jen Jen
Published in Annals of surgery (01.10.2024)
Published in Annals of surgery (01.10.2024)
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Journal Article
CRISPR/Cas9/AAV9-mediated in vivo editing identifies MYC regulation of 3D genome in skeletal muscle stem cell
He, Liangqiang, Ding, Yingzhe, Zhao, Yu, So, Karl K., Peng, Xianlu L., Li, Yuying, Yuan, Jie, He, Zhiming, Chen, Xiaona, Sun, Hao, Wang, Huating
Published in Stem cell reports (12.10.2021)
Published in Stem cell reports (12.10.2021)
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Journal Article
Plasma DNA aberrations in systemic lupus erythematosus revealed by genomic and methylomic sequencing
Chan, Rebecca W Y, Jiang, Peiyong, Peng, Xianlu, Tam, Lai-Shan, Liao, Gary J W, Li, Edmund K M, Wong, Priscilla C H, Sun, Hao, Chan, K C Allen, Chiu, Rossa W K, Lo, Y M Dennis
Published in Proceedings of the National Academy of Sciences - PNAS (09.12.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (09.12.2014)
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Journal Article
Myofibroblastic cancer‐associated fibroblast subtype heterogeneity in pancreatic cancer
Kearney, Joseph F., Trembath, Hannah E., Chan, Priscilla S., Morrison, Ashley B., Xu, Yi, Luan, Chang Fei, McCabe, Ian C., Zarmer, Sandra A., Kim, Hong Jin, Peng, Xianlu L., Yeh, Jen Jen
Published in Journal of surgical oncology (01.04.2024)
Published in Journal of surgical oncology (01.04.2024)
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Journal Article
Single-cell transcriptome analysis defines heterogeneity of the murine pancreatic ductal tree
Hendley, Audrey M, Rao, Arjun A, Leonhardt, Laura, Ashe, Sudipta, Smith, Jennifer A, Giacometti, Simone, Peng, Xianlu L, Jiang, Honglin, Berrios, David I, Pawlak, Mathias, Li, Lucia Y, Lee, Jonghyun, Collisson, Eric A, Anderson, Mark S, Fragiadakis, Gabriela K, Yeh, Jen Jen, Ye, Chun Jimmie, Kim, Grace E, Weaver, Valerie M, Hebrok, Matthias
Published in eLife (19.05.2021)
Published in eLife (19.05.2021)
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Journal Article
Open-source curation of a pancreatic ductal adenocarcinoma gene expression analysis platform (pdacR) supports a two-subtype model
Torre-Healy, Luke A., Kawalerski, Ryan R., Oh, Ki, Chrastecka, Lucie, Peng, Xianlu L., Aguirre, Andrew J., Rashid, Naim U., Yeh, Jen Jen, Moffitt, Richard A.
Published in Communications biology (10.02.2023)
Published in Communications biology (10.02.2023)
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Journal Article
De novo compartment deconvolution and weight estimation of tumor samples using DECODER
Peng, Xianlu Laura, Moffitt, Richard A., Torphy, Robert J., Volmar, Keith E., Yeh, Jen Jen
Published in Nature communications (18.10.2019)
Published in Nature communications (18.10.2019)
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Journal Article
Irreversible JNK1-JUN inhibition by JNK-IN-8 sensitizes pancreatic cancer to 5-FU/FOLFOX chemotherapy
Lipner, Matthew B, Peng, Xianlu L, Jin, Chong, Xu, Yi, Gao, Yanzhe, East, Michael P, Rashid, Naim U, Moffitt, Richard A, Herrera Loeza, Silvia G, Morrison, Ashley B, Golitz, Brian T, Vaziri, Cyrus, Graves, Lee M, Johnson, Gary L, Yeh, Jen Jen
Published in JCI insight (23.04.2020)
Published in JCI insight (23.04.2020)
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Journal Article
Truncated O-Glycan-Bearing MUC16 Enhances Pancreatic Cancer Cells Aggressiveness via α4β1 Integrin Complexes and FAK Signaling
Rajesh, Christabelle, Sagar, Satish, Rathinavel, Ashok Kumar, Chemparathy, Divya Thomas, Peng, Xianlu Laura, Yeh, Jen Jen, Hollingsworth, Michael A, Radhakrishnan, Prakash
Published in International journal of molecular sciences (13.05.2022)
Published in International journal of molecular sciences (13.05.2022)
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Journal Article
FetalQuantSD: accurate quantification of fetal DNA fraction by shallow-depth sequencing of maternal plasma DNA
Jiang, Peiyong, Peng, Xianlu, Su, Xiaoxi, Sun, Kun, Yu, Stephanie C Y, Chu, Weng In, Leung, Tak Y, Sun, Hao, Chiu, Rossa W K, Lo, Yuk Ming Dennis, Chan, Kwan Chee Allen
Published in Npj genomic medicine (11.05.2016)
Published in Npj genomic medicine (11.05.2016)
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Journal Article
CAFomics: convergence to translation for precision stroma approaches
McCabe, Ian C, Peng, Xianlu L, Kearney, Joseph F, Yeh, Jen Jen
Published in Carcinogenesis (New York) (08.11.2024)
Published in Carcinogenesis (New York) (08.11.2024)
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Journal Article
S ub- C luster I dentification through S emi- S upervised O ptimization of R are-Cell S ilhouettes (SCISSORS) in single-cell RNA-sequencing
Leary, Jack R, Xu, Yi, Morrison, Ashley B, Jin, Chong, Shen, Emily C, Kuhlers, Peyton C, Su, Ye, Rashid, Naim U, Yeh, Jen Jen, Peng, Xianlu Laura
Published in Bioinformatics (Oxford, England) (01.08.2023)
Published in Bioinformatics (Oxford, England) (01.08.2023)
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