The khmer software package: enabling efficient nucleotide sequence analysis [version 1; peer review: 2 approved, 1 approved with reservations]
Crusoe, Michael R, Alameldin, Hussien F, Awad, Sherine, Boucher, Elmar, Caldwell, Adam, Cartwright, Reed, Charbonneau, Amanda, Constantinides, Bede, Edvenson, Greg, Fay, Scott, Fenton, Jacob, Fenzl, Thomas, Fish, Jordan, Garcia-Gutierrez, Leonor, Garland, Phillip, Gluck, Jonathan, González, Iván, Guermond, Sarah, Guo, Jiarong, Gupta, Aditi, Herr, Joshua R, Howe, Adina, Hyer, Alex, Härpfer, Andreas, Irber, Luiz, Kidd, Rhys, Lin, David, Lippi, Justin, Mansour, Tamer, McA'Nulty, Pamela, McDonald, Eric, Mizzi, Jessica, Murray, Kevin D, Nahum, Joshua R, Nanlohy, Kaben, Nederbragt, Alexander Johan, Ortiz-Zuazaga, Humberto, Ory, Jeramia, Pell, Jason, Pepe-Ranney, Charles, Russ, Zachary N, Schwarz, Erich, Scott, Camille, Seaman, Josiah, Sievert, Scott, Simpson, Jared, Skennerton, Connor T, Spencer, James, Srinivasan, Ramakrishnan, Standage, Daniel, Stapleton, James A, Steinman, Susan R, Stein, Joe, Taylor, Benjamin, Trimble, Will, Wiencko, Heather L, Wright, Michael, Wyss, Brian, Zhang, Qingpeng, zyme, en, Brown, C. Titus
Published in F1000 research (2015)
Published in F1000 research (2015)
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The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus
Schwarz, Erich M, Korhonen, Pasi K, Campbell, Bronwyn E, Young, Neil D, Jex, Aaron R, Jabbar, Abdul, Hall, Ross S, Mondal, Alinda, Howe, Adina C, Pell, Jason, Hofmann, Andreas, Boag, Peter R, Zhu, Xing-Quan, Gregory, T, Loukas, Alex, Williams, Brian A, Antoshechkin, Igor, Brown, C, Sternberg, Paul W, Gasser, Robin B
Published in Genome biology (28.08.2013)
Published in Genome biology (28.08.2013)
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Journal Article
These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure
Zhang, Qingpeng, Pell, Jason, Canino-Koning, Rosangela, Adina Chuang Howe, C Titus Brown
Published in arXiv.org (14.07.2014)
Published in arXiv.org (14.07.2014)
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Illumina Sequencing Artifacts Revealed by Connectivity Analysis of Metagenomic Datasets
Howe, Adina Chuang, Pell, Jason, Canino-Koning, Rosangela, Mackelprang, Rachel, Tringe, Susannah, Jansson, Janet, Tiedje, James M, Brown, C. Titus
Year of Publication 01.12.2012
Year of Publication 01.12.2012
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Journal Article
Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
Pell, Jason, Hintze, Arend, Canino-Koning, Rosangela, Howe, Adina, Tiedje, James M, C Titus Brown
Published in arXiv.org (30.06.2012)
Published in arXiv.org (30.06.2012)
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Workshop: Graph compression approaches in assembly
Pell, J., Hintze, A., Canino-Koning, R., Howe, A., Tiedje, J. M., Titus Brown, C.
Published in 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012 (01.02.2012)
Published in 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012 (01.02.2012)
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