HelixDiff, a Score-Based Diffusion Model for Generating All-Atom α‑Helical Structures
Xie, Xuezhi, Valiente, Pedro A, Kim, Jisun, Kim, Philip M
Published in ACS central science (22.05.2024)
Published in ACS central science (22.05.2024)
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Journal Article
Identification of Inhibitors of CD36-Amyloid Beta Binding as Potential Agents for Alzheimer’s Disease
Doens, Deborah, Valiente, Pedro A, Mfuh, Adelphe M, X. T. Vo, Anh, Tristan, Adilia, Carreño, Lizmar, Quijada, Mario, Nguyen, Vu T, Perry, George, Larionov, Oleg V, Lleonart, Ricardo, Fernández, Patricia L
Published in ACS chemical neuroscience (21.06.2017)
Published in ACS chemical neuroscience (21.06.2017)
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Journal Article
HelixGAN a deep-learning methodology for conditional de novo design of α-helix structures
Xie, Xuezhi, Valiente, Pedro A, Kim, Philip M
Published in Bioinformatics (Oxford, England) (01.01.2023)
Published in Bioinformatics (Oxford, England) (01.01.2023)
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Journal Article
Computational Design of Potent and Selective d‑Peptide Agonists of the Glucagon-like Peptide‑2 Receptor
Valiente, Pedro A., Nim, Satra, Kim, Jisun, Kim, Philip M.
Published in Journal of medicinal chemistry (10.08.2023)
Published in Journal of medicinal chemistry (10.08.2023)
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Journal Article
Antibody-SGM, a Score-Based Generative Model for Antibody Heavy-Chain Design
Xie, Xuezhi, Valiente, Pedro A., Lee, Jin Sub, Kim, Jisun, Kim, Philip M.
Published in Journal of chemical information and modeling (09.09.2024)
Published in Journal of chemical information and modeling (09.09.2024)
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Journal Article
Computational Design of Potent D‑Peptide Inhibitors of SARS-CoV‑2
Valiente, Pedro A, Wen, Han, Nim, Satra, Lee, JinAh, Kim, Hyeon Ju, Kim, Jinhee, Perez-Riba, Albert, Paudel, Yagya Prasad, Hwang, Insu, Kim, Kyun-Do, Kim, Seungtaek, Kim, Philip M
Published in Journal of medicinal chemistry (28.10.2021)
Published in Journal of medicinal chemistry (28.10.2021)
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Journal Article
Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 Workshop report
Perez-Riverol, Yasset, Hermjakob, Henning, Kohlbacher, Oliver, Martens, Lennart, Creasy, David, Cox, Jürgen, Leprevost, Felipe, Shan, Baozhen Paul, Pérez-Nueno, Violeta I., Blazejczyk, Michal, Punta, Marco, Vierlinger, Klemens, Valiente, Pedro A., Leon, Kalet, Chinea, Glay, Guirola, Osmany, Bringas, Ricardo, Cabrera, Gleysin, Guillen, Gerardo, Padron, Gabriel, Gonzalez, Luis Javier, Besada, Vladimir
Published in Journal of proteomics (11.07.2013)
Published in Journal of proteomics (11.07.2013)
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Journal Article
A Method to Calculate the Relative Binding Free Energy Differences of α‑Helical Stapled Peptides
Valiente, Pedro A, Becerra, David, Kim, Philip M
Published in Journal of organic chemistry (07.02.2020)
Published in Journal of organic chemistry (07.02.2020)
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Journal Article
Targeting the Receptor-Binding Motif of SARS-CoV‑2 with D‑Peptides Mimicking the ACE2 Binding Helix: Lessons for Inhibiting Omicron and Future Variants of Concern
Valiente, Pedro A., Nim, Satra, Lee, JinAh, Kim, Seungtaek, Kim, Philip M.
Published in Journal of chemical information and modeling (08.08.2022)
Published in Journal of chemical information and modeling (08.08.2022)
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Journal Article
Assessment of Different Parameters on the Accuracy of Computational Alanine Scanning of Protein–Protein Complexes with the Molecular Mechanics/Generalized Born Surface Area Method
Valdés-Tresanco, Mario E., Valdés-Tresanco, Mario S., Moreno, Ernesto, Valiente, Pedro A.
Published in The journal of physical chemistry. B (02.02.2023)
Published in The journal of physical chemistry. B (02.02.2023)
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Journal Article
Engineering a Rigid Nucleic Acid Structure to Improve the Limit of Detection for Genetic Assays
Malekjahani, Ayden, Lekuti, Ayokunle A., Valiente, Pedro A., Osborne, Matthew, Li, Vanessa Y. C., Kim, Philip M., Chan, Warren C. W.
Published in Analytical chemistry (Washington) (11.06.2024)
Published in Analytical chemistry (Washington) (11.06.2024)
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Journal Article
membranotropic activity of N-terminal peptides from the pore-forming proteins sticholysin I and II is modulated by hydrophobic and electrostatic interactions as well as lipid composition
Ros, Uris, Pedrera, Lohans, Díaz, Daylín, de Karam, Juan C, Sudbrack, Tatiane P, Valiente, Pedro A, Martínez, Diana, Cilli, Eduardo M, Pazos, Fabiola, Itri, Rosangela, Lanio, Maria E, Schreier, Shirley, Álvarez, Carlos
Published in Journal of biosciences (01.12.2011)
Published in Journal of biosciences (01.12.2011)
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Journal Article
Exploring the conformational dynamics of PD1 in complex with different ligands: What we can learn for designing novel PD1 signaling blockers?
Ponce, Luis F., García‐Martínez, Karina, León, Kalet, Valiente, Pedro A.
Published in Proteins, structure, function, and bioinformatics (01.02.2021)
Published in Proteins, structure, function, and bioinformatics (01.02.2021)
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