Differential allelic representation (DAR) identifies candidate eQTLs and improves transcriptome analysis
Baer, Lachlan, Barthelson, Karissa, Postlethwait, John H, Adelson, David L, Pederson, Stephen M, Lardelli, Michael
Published in PLoS computational biology (01.02.2024)
Published in PLoS computational biology (01.02.2024)
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Transcriptome analyses of 7-day-old zebrafish larvae possessing a familial Alzheimer's disease-like mutation in psen1 indicate effects on oxidative phosphorylation, ECM and MCM functions, and iron homeostasis
Dong, Yang, Newman, Morgan, Pederson, Stephen M, Barthelson, Karissa, Hin, Nhi, Lardelli, Michael
Published in BMC genomics (24.03.2021)
Published in BMC genomics (24.03.2021)
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The androgen receptor interacts with GATA3 to transcriptionally regulate a luminal epithelial cell phenotype in breast cancer
Hosseinzadeh, Leila, Kikhtyak, Zoya, Laven-Law, Geraldine, Pederson, Stephen M, Puiu, Caroline G, D'Santos, Clive S, Lim, Elgene, Carroll, Jason S, Tilley, Wayne D, Dwyer, Amy R, Hickey, Theresa E
Published in Genome Biology (05.02.2024)
Published in Genome Biology (05.02.2024)
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Effects of aging on the motor, cognitive and affective behaviors, neuroimmune responses and hippocampal gene expression
Singhal, Gaurav, Morgan, Julie, Jawahar, Magdalene C., Corrigan, Frances, Jaehne, Emily J., Toben, Catherine, Breen, James, Pederson, Stephen M., Manavis, Jim, Hannan, Anthony J., Baune, Bernhard T.
Published in Behavioural brain research (06.04.2020)
Published in Behavioural brain research (06.04.2020)
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Transcriptional targets of senataxin and E2 promoter binding factors are associated with neuro-degenerative pathways during increased autophagic flux
Casey, Aaron E., Liu, Wenjun, Hein, Leanne K., Sargeant, Timothy J., Pederson, Stephen M., Mäkinen, Ville-Petteri
Published in Scientific reports (21.10.2022)
Published in Scientific reports (21.10.2022)
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Parallel recovery of chromatin accessibility and gene expression dynamics from frozen human regulatory T cells
Wong, Ying Y., Harbison, Jessica E., Hope, Christopher M., Gundsambuu, Batjargal, Brown, Katherine A., Wong, Soon W., Brown, Cheryl Y, Couper, Jennifer J., Breen, Jimmy, Liu, Ning, Pederson, Stephen M., Köhne, Maren, Klee, Kathrin, Schultze, Joachim, Beyer, Marc, Sadlon, Timothy, Barry, Simon C.
Published in Scientific reports (04.04.2023)
Published in Scientific reports (04.04.2023)
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Placental Transcription Profiling in 6-23 Weeks' Gestation Reveals Differential Transcript Usage in Early Development
Bogias, Konstantinos J, Pederson, Stephen M, Leemaqz, Shalem, Smith, Melanie D, McAninch, Dale, Jankovic-Karasoulos, Tanja, McCullough, Dylan, Wan, Qianhui, Bianco-Miotto, Tina, Breen, James, Roberts, Claire T
Published in International journal of molecular sciences (19.04.2022)
Published in International journal of molecular sciences (19.04.2022)
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Transposable elements and gene expression during the evolution of amniotes
Zeng, Lu, Pederson, Stephen M, Kortschak, R Daniel, Adelson, David L
Published in Mobile DNA (12.06.2018)
Published in Mobile DNA (12.06.2018)
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Unbiased gene expression analysis of the delayed fracture healing observed in Zucker diabetic fatty rats
Sung, Jonghoo, Barratt, Kate R., Pederson, Stephen M., Chenu, Chantal, Reichert, Ines, Atkins, Gerald J., Anderson, Paul H., Smitham, Peter J.
Published in Bone & joint research (17.10.2023)
Published in Bone & joint research (17.10.2023)
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Genome-Wide CRISPR Screen Identifies RACK1 as a Critical Host Factor for Flavivirus Replication
Shue, Byron, Chiramel, Abhilash I, Cerikan, Berati, To, Thu-Hien, Frölich, Sonja, Pederson, Stephen M, Kirby, Emily N, Eyre, Nicholas S, Bartenschlager, Ralf F W, Best, Sonja M, Beard, Michael R
Published in Journal of virology (23.11.2021)
Published in Journal of virology (23.11.2021)
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The effects of short-term and long-term environmental enrichment on locomotion, mood-like behavior, cognition and hippocampal gene expression
Singhal, Gaurav, Morgan, Julie, Jawahar, Magdalene C., Corrigan, Frances, Jaehne, Emily J., Toben, Catherine, Breen, Jimmy, Pederson, Stephen M., Hannan, Anthony J., Baune, Bernhard T.
Published in Behavioural brain research (05.08.2019)
Published in Behavioural brain research (05.08.2019)
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Metal resistant bacteria on gold particles: Implications of how anthropogenic contaminants could affect natural gold biogeochemical cycling
Sanyal, Santonu Kumar, Brugger, Joël, Etschmann, Barbara, Pederson, Stephen M., Delport, P.W. Jaco, Dixon, Roger, Tearle, Rick, Ludington, Alastair, Reith, Frank, Shuster, Jeremiah
Published in The Science of the total environment (20.07.2020)
Published in The Science of the total environment (20.07.2020)
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ACKR4 restrains antitumor immunity by regulating CCL21
Whyte, Carly E, Osman, Maleika, Kara, Ervin E, Abbott, Caitlin, Foeng, Jade, McKenzie, Duncan R, Fenix, Kevin A, Harata-Lee, Yuka, Foyle, Kerrie L, Boyle, Sarah T, Kochetkova, Marina, Aguilera, Amelia Roman, Hou, Jiajie, Li, Xian-Yang, Armstrong, Mark A, Pederson, Stephen M, Comerford, Iain, Smyth, Mark J, McColl, Shaun R
Published in The Journal of experimental medicine (01.06.2020)
Published in The Journal of experimental medicine (01.06.2020)
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Determination of Tr1 cell populations correlating with distinct activation states in acute IAV infection
Abbott, Caitlin A, Freimayer, Emily L, Tyllis, Timona S, Norton, Todd S, Alsharifi, Mohammed, Heng, Aaron H S, Pederson, Stephen M, Qu, Zhipeng, Armstrong, Mark, Hill, Geoffrey R, McColl, Shaun R, Comerford, Iain
Published in Mucosal immunology (01.10.2023)
Published in Mucosal immunology (01.10.2023)
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Short-term environmental enrichment, and not physical exercise, alleviate cognitive decline and anxiety from middle age onwards without affecting hippocampal gene expression
Singhal, Gaurav, Morgan, Julie, Jawahar, Magdalene C., Corrigan, Frances, Jaehne, Emily J., Toben, Catherine, Breen, James, Pederson, Stephen M., Hannan, Anthony J., Baune, Bernhard T.
Published in Cognitive, affective, & behavioral neuroscience (01.10.2019)
Published in Cognitive, affective, & behavioral neuroscience (01.10.2019)
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Genome-Wide Analysis of the Association of Transposable Elements with Gene Regulation Suggests that Alu Elements Have the Largest Overall Regulatory Impact
Zeng, Lu, Pederson, Stephen M, Cao, Danfeng, Qu, Zhipeng, Hu, Zhiqiang, Adelson, David L, Wei, Chaochun
Published in Journal of computational biology (01.06.2018)
Published in Journal of computational biology (01.06.2018)
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FOXP3 and miR-155 cooperate to control the invasive potential of human breast cancer cells by down regulating ZEB2 independently of ZEB1
Brown, Cheryl Y, Dayan, Sonia, Wong, Soon Wei, Kaczmarek, Adrian, Hope, Christopher M, Pederson, Stephen M, Arnet, Victoria, Goodall, Gregory J, Russell, Darryl, Sadlon, Timothy J, Barry, Simon C
Published in Oncotarget (12.06.2018)
Published in Oncotarget (12.06.2018)
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