Reconciling qualitative, abstract, and scalable modeling of biological networks
Paulevé, Loïc, Kolčák, Juri, Chatain, Thomas, Haar, Stefan
Published in Nature communications (26.08.2020)
Published in Nature communications (26.08.2020)
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Journal Article
MERRIN: MEtabolic regulation rule INference from time series data
Thuillier, Kerian, Baroukh, Caroline, Bockmayr, Alexander, Cottret, Ludovic, Paulevé, Loïc, Siegel, Anne
Published in Bioinformatics (16.09.2022)
Published in Bioinformatics (16.09.2022)
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Journal Article
A detailed map of coupled circadian clock and cell cycle with qualitative dynamics validation
Rougny, Adrien, Paulevé, Loïc, Teboul, Michèle, Delaunay, Franck
Published in BMC bioinformatics (11.05.2021)
Published in BMC bioinformatics (11.05.2021)
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Journal Article
scBoolSeq: Linking scRNA-seq statistics and Boolean dynamics
Magaña-López, Gustavo, Calzone, Laurence, Zinovyev, Andrei, Paulevé, Loïc
Published in PLoS computational biology (08.07.2024)
Published in PLoS computational biology (08.07.2024)
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Journal Article
Towards a qualitative theory of the interruption of eating behavior change
Dague, Philippe, Muller, Laurent, Paulevé, Loïc, Irigoin-Guichandut, Marc
Published in Journal of theoretical biology (21.03.2024)
Published in Journal of theoretical biology (21.03.2024)
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Journal Article
Concurrency in Boolean networks
Chatain, Thomas, Haar, Stefan, Kolčák, Juraj, Paulevé, Loïc, Thakkar, Aalok
Published in Natural computing (01.03.2020)
Published in Natural computing (01.03.2020)
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Journal Article
Dynamical properties of Discrete Reaction Networks
Paulevé, Loïc, Craciun, Gheorghe, Koeppl, Heinz
Published in Journal of mathematical biology (01.07.2014)
Published in Journal of mathematical biology (01.07.2014)
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Journal Article
The Redox Status of Cancer Cells Supports Mechanisms behind the Warburg Effect
Moreira, Jorgelindo da Veiga, Hamraz, Minoo, Abolhassani, Mohammad, Bigan, Erwan, Pérès, Sabine, Paulevé, Loïc, Nogueira, Marcel Levy, Steyaert, Jean-Marc, Schwartz, Laurent
Published in Metabolites (03.10.2016)
Published in Metabolites (03.10.2016)
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Journal Article
Boolean Networks: Beyond Generalized Asynchronicity
Chatain, Thomas, Haar, Stefan, Paulevé, Loïc
Published in Cellular Automata and Discrete Complex Systems (01.01.2018)
Published in Cellular Automata and Discrete Complex Systems (01.01.2018)
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Book Chapter
Characterization of Reachable Attractors Using Petri Net Unfoldings
Chatain, Thomas, Haar, Stefan, Jezequel, Loïg, Paulevé, Loïc, Schwoon, Stefan
Published in Computational Methods in Systems Biology (01.01.2014)
Published in Computational Methods in Systems Biology (01.01.2014)
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Book Chapter
Parameter space abstraction and unfolding semantics of discrete regulatory networks
Kolčák, Juraj, Šafránek, David, Haar, Stefan, Paulevé, Loïc
Published in Theoretical computer science (18.04.2019)
Published in Theoretical computer science (18.04.2019)
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Journal Article
Algorithms for the Sequential Reprogramming of Boolean Networks
Mandon, Hugues, Su, Cui, Pang, Jun, Paul, Soumya, Haar, Stefan, Pauleve, Loic
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.09.2019)
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.09.2019)
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Journal Article
Reconstructing dynamic molecular states from single-cell time series
Huang, Lirong, Pauleve, Loic, Zechner, Christoph, Unger, Michael, Hansen, Anders S., Koeppl, Heinz
Published in Journal of the Royal Society interface (01.09.2016)
Published in Journal of the Royal Society interface (01.09.2016)
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Journal Article
Sufficient conditions for reachability in automata networks with priorities
Folschette, Maxime, Paulevé, Loïc, Magnin, Morgan, Roux, Olivier
Published in Theoretical computer science (10.12.2015)
Published in Theoretical computer science (10.12.2015)
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Journal Article