Polder maps: improving OMIT maps by excluding bulk solvent
Liebschner, Dorothee, Afonine, Pavel V., Moriarty, Nigel W., Poon, Billy K., Sobolev, Oleg V., Terwilliger, Thomas C., Adams, Paul D.
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2017)
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2017)
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Journal Article
EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy
Barad, Benjamin A, Echols, Nathaniel, Wang, Ray Yu-Ruei, Cheng, Yifan, DiMaio, Frank, Adams, Paul D, Fraser, James S
Published in Nature methods (01.10.2015)
Published in Nature methods (01.10.2015)
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Journal Article
New tools for the analysis and validation of cryo‐EM maps and atomic models
Afonine, Pavel V., Klaholz, Bruno P., Moriarty, Nigel W., Poon, Billy K., Sobolev, Oleg V., Terwilliger, Thomas C., Adams, Paul D., Urzhumtsev, Alexandre
Published in Acta crystallographica. Section D, Biological crystallography. (01.09.2018)
Published in Acta crystallographica. Section D, Biological crystallography. (01.09.2018)
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Journal Article
A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps
Terwilliger, Thomas C, Adams, Paul D, Afonine, Pavel V, Sobolev, Oleg V
Published in Nature methods (01.11.2018)
Published in Nature methods (01.11.2018)
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Journal Article
MolProbity: More and better reference data for improved all‐atom structure validation
Williams, Christopher J., Headd, Jeffrey J., Moriarty, Nigel W., Prisant, Michael G., Videau, Lizbeth L., Deis, Lindsay N., Verma, Vishal, Keedy, Daniel A., Hintze, Bradley J., Chen, Vincent B., Jain, Swati, Lewis, Steven M., Arendall, W. Bryan, Snoeyink, Jack, Adams, Paul D., Lovell, Simon C., Richardson, Jane S., Richardson, David C.
Published in Protein science (01.01.2018)
Published in Protein science (01.01.2018)
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Journal Article
Employing a biochemical protecting group for a sustainable indigo dyeing strategy
Hsu, Tammy M, Welner, Ditte H, Russ, Zachary N, Cervantes, Bernardo, Prathuri, Ramya L, Adams, Paul D, Dueber, John E
Published in Nature chemical biology (01.03.2018)
Published in Nature chemical biology (01.03.2018)
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Journal Article
The cryo-electron microscopy structure of human transcription factor IIH
Greber, Basil J, Nguyen, Thi Hoang Duong, Fang, Jie, Afonine, Pavel V, Adams, Paul D, Nogales, Eva
Published in Nature (London) (21.09.2017)
Published in Nature (London) (21.09.2017)
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Journal Article
A New Generation of Crystallographic Validation Tools for the Protein Data Bank
Read, Randy J., Adams, Paul D., Arendall, W. Bryan, Brunger, Axel T., Emsley, Paul, Joosten, Robbie P., Kleywegt, Gerard J., Krissinel, Eugene B., Lütteke, Thomas, Otwinowski, Zbyszek, Perrakis, Anastassis, Richardson, Jane S., Sheffler, William H., Smith, Janet L., Tickle, Ian J., Vriend, Gert, Zwart, Peter H.
Published in Structure (London) (12.10.2011)
Published in Structure (London) (12.10.2011)
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Journal Article
Phaser.MRage: automated molecular replacement
Bunkóczi, Gábor, Echols, Nathaniel, McCoy, Airlie J., Oeffner, Robert D., Adams, Paul D., Read, Randy J.
Published in Acta crystallographica. Section D, Biological crystallography. (01.11.2013)
Published in Acta crystallographica. Section D, Biological crystallography. (01.11.2013)
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Journal Article
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Davis, Ian W., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Kapral, Gary J., Grosse-Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert, Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2010)
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2010)
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Journal Article
Accurate model annotation of a near-atomic resolution cryo-EM map
Hryc, Corey F., Chen, Dong-Hua, Afonine, Pavel V., Jakana, Joanita, Wang, Zhao, Haase-Pettingell, Cameron, Jiang, Wen, Adams, Paul D., King, Jonathan A., Schmid, Michael F., Chiu, Wah
Published in Proceedings of the National Academy of Sciences - PNAS (21.03.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (21.03.2017)
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Journal Article
Enhancing fatty acid production by the expression of the regulatory transcription factor FadR
Zhang, Fuzhong, Ouellet, Mario, Batth, Tanveer S., Adams, Paul D., Petzold, Christopher J., Mukhopadhyay, Aindrila, Keasling, Jay D.
Published in Metabolic engineering (01.11.2012)
Published in Metabolic engineering (01.11.2012)
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Journal Article
Integrated analysis of isopentenyl pyrophosphate (IPP) toxicity in isoprenoid-producing Escherichia coli
George, Kevin W., Thompson, Mitchell G., Kim, Joonhoon, Baidoo, Edward E.K., Wang, George, Benites, Veronica Teixeira, Petzold, Christopher J., Chan, Leanne Jade G., Yilmaz, Suzan, Turhanen, Petri, Adams, Paul D., Keasling, Jay D., Lee, Taek Soon
Published in Metabolic engineering (01.05.2018)
Published in Metabolic engineering (01.05.2018)
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Journal Article
The Phenix software for automated determination of macromolecular structures
Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Jain, Swati, Kapral, Gary J., Grosse Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert D., Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.
Published in Methods (San Diego, Calif.) (01.09.2011)
Published in Methods (San Diego, Calif.) (01.09.2011)
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Journal Article
Cryo‐EM map interpretation and protein model‐building using iterative map segmentation
Terwilliger, Thomas C., Adams, Paul D., Afonine, Pavel V., Sobolev, Oleg V.
Published in Protein science (01.01.2020)
Published in Protein science (01.01.2020)
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