Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix
Moriarty, Nigel W., Janowski, Pawel A., Swails, Jason M., Nguyen, Hai, Richardson, Jane S., Case, David A., Adams, Paul D.
Published in Acta crystallographica. Section D, Biological crystallography. (01.01.2020)
Published in Acta crystallographica. Section D, Biological crystallography. (01.01.2020)
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An editor for the generation and customization of geometry restraints
Moriarty, Nigel W., Draizen, Eli J., Adams, Paul D.
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2017)
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2017)
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Journal Article
High-Resolution Structure of RNase P Protein from Thermotoga maritima
Kazantsev, Alexei V., Krivenko, Angelika A., Harrington, Daniel J., Carter, Richard J., Holbrook, Stephen R., Adams, Paul D., Pace, Norman R.
Published in Proceedings of the National Academy of Sciences - PNAS (24.06.2003)
Published in Proceedings of the National Academy of Sciences - PNAS (24.06.2003)
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High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production
Cheng, Xiaoliang, Hiras, Jennifer, Deng, Kai, Bowen, Benjamin, Simmons, Blake A, Adams, Paul D, Singer, Steven W, Northen, Trent R
Published in Frontiers in microbiology (2013)
Published in Frontiers in microbiology (2013)
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Characterization of lignin-degrading enzyme PmdC, which catalyzes a key step in the synthesis of polymer precursor 2-pyrone-4,6-dicarboxylic acid
Rodrigues, Andria V., Moriarty, Nigel W., Kakumanu, Ramu, DeGiovanni, Andy, Pereira, Jose Henrique, Gin, Jennifer W., Chen, Yan, Baidoo, Edward E.K., Petzold, Christopher J., Adams, Paul D.
Published in The Journal of biological chemistry (01.10.2024)
Published in The Journal of biological chemistry (01.10.2024)
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Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution
Headd, Jeffrey J., Echols, Nathaniel, Afonine, Pavel V., Grosse-Kunstleve, Ralf W., Chen, Vincent B., Moriarty, Nigel W., Richardson, David C., Richardson, Jane S., Adams, Paul D.
Published in Acta crystallographica. Section D, Biological crystallography. (01.04.2012)
Published in Acta crystallographica. Section D, Biological crystallography. (01.04.2012)
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Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy
Kern, Jan, Tran, Rosalie, Alonso-Mori, Roberto, Koroidov, Sergey, Echols, Nathaniel, Hattne, Johan, Ibrahim, Mohamed, Gul, Sheraz, Laksmono, Hartawan, Sierra, Raymond G, Gildea, Richard J, Han, Guangye, Hellmich, Julia, Lassalle-Kaiser, Benedikt, Chatterjee, Ruchira, Brewster, Aaron S, Stan, Claudiu A, Glöckner, Carina, Lampe, Alyssa, DiFiore, Dörte, Milathianaki, Despina, Fry, Alan R, Seibert, M Marvin, Koglin, Jason E, Gallo, Erik, Uhlig, Jens, Sokaras, Dimosthenis, Weng, Tsu-Chien, Zwart, Petrus H, Skinner, David E, Bogan, Michael J, Messerschmidt, Marc, Glatzel, Pieter, Williams, Garth J, Boutet, Sébastien, Adams, Paul D, Zouni, Athina, Messinger, Johannes, Sauter, Nicholas K, Bergmann, Uwe, Yano, Junko, Yachandra, Vittal K
Published in Nature communications (09.07.2014)
Published in Nature communications (09.07.2014)
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Renewable production of high density jet fuel precursor sesquiterpenes from Escherichia coli
Liu, Chun-Li, Tian, Tian, Alonso-Gutierrez, Jorge, Garabedian, Brett, Wang, Shuai, Baidoo, Edward E K, Benites, Veronica, Chen, Yan, Petzold, Christopher J, Adams, Paul D, Keasling, Jay D, Tan, Tianwei, Lee, Taek Soon
Published in Biotechnology for biofuels (20.10.2018)
Published in Biotechnology for biofuels (20.10.2018)
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Rapid quantification of alcohol production in microorganisms based on nanostructure-initiator mass spectrometry (NIMS)
Deng, Kai, Wang, Xi, Ing, Nicole, Opgenorth, Paul, de Raad, Markus, Kim, Jinho, Simmons, Blake A., Adams, Paul D., Singh, Anup K., Lee, Taek Soon, Northen, Trent R.
Published in Analytical biochemistry (01.02.2023)
Published in Analytical biochemistry (01.02.2023)
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Journal Article
Potent and selective covalent inhibition of the papain-like protease from SARS-CoV-2
Sanders, Brian C, Pokhrel, Suman, Labbe, Audrey D, Mathews, Irimpan I, Cooper, Connor J, Davidson, Russell B, Phillips, Gwyndalyn, Weiss, Kevin L, Zhang, Qiu, O'Neill, Hugh, Kaur, Manat, Schmidt, Jurgen G, Reichard, Walter, Surendranathan, Surekha, Parvathareddy, Jyothi, Phillips, Lexi, Rainville, Christopher, Sterner, David E, Kumaran, Desigan, Andi, Babak, Babnigg, Gyorgy, Moriarty, Nigel W, Adams, Paul D, Joachimiak, Andrzej, Hurst, Brett L, Kumar, Suresh, Butt, Tauseef R, Jonsson, Colleen B, Ferrins, Lori, Wakatsuki, Soichi, Galanie, Stephanie, Head, Martha S, Parks, Jerry M
Published in Nature communications (28.03.2023)
Published in Nature communications (28.03.2023)
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Alkaline-SDS cell lysis of microbes with acetone protein precipitation for proteomic sample preparation in 96-well plate format
Chen, Yan, Gin, Jennifer W, Wang, Ying, de Raad, Markus, Tan, Stephen, Hillson, Nathan J, Northen, Trent R, Adams, Paul D, Petzold, Christopher J
Published in PloS one (07.07.2023)
Published in PloS one (07.07.2023)
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Journal Article
Protein structures by spallation neutron crystallography
Langan, Paul, Fisher, Zoë, Kovalevsky, Andrii, Mustyakimov, Marat, Sutcliffe Valone, Amanda, Unkefer, Cliff, Waltman, Mary Jo, Coates, Leighton, Adams, Paul D., Afonine, Pavel V., Bennett, Brad, Dealwis, Chris, Schoenborn, Benno P.
Published in Journal of synchrotron radiation (01.05.2008)
Published in Journal of synchrotron radiation (01.05.2008)
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X-Ray Crystallographic and Kinetic Studies of Human Sorbitol Dehydrogenase
Pauly, Thomas A., Ekstrom, Jennifer L., Beebe, David A., Chrunyk, Boris, Cunningham, David, Griffor, Matthew, Kamath, Ajith, Lee, S.Edward, Madura, Rebecca, Mcguire, Dewitt, Subashi, Timothy, Wasilko, David, Watts, Paul, Mylari, Banavara L., Oates, Peter J., Adams, Paul D., Rath, Virginia L.
Published in Structure (London) (01.09.2003)
Published in Structure (London) (01.09.2003)
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Evaluation of models determined by neutron diffraction and proposed improvements to their validation and deposition
Liebschner, Dorothee, Afonine, Pavel V., Moriarty, Nigel W., Langan, Paul, Adams, Paul D.
Published in Acta crystallographica. Section D, Biological crystallography. (01.08.2018)
Published in Acta crystallographica. Section D, Biological crystallography. (01.08.2018)
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Journal Article
Likelihood‐based interactive local docking into cryo‐EM maps in ChimeraX
Read, Randy J., Pettersen, Eric F., McCoy, Airlie J., Croll, Tristan I., Terwilliger, Thomas C., Poon, Billy K., Meng, Elaine C., Liebschner, Dorothee, Adams, Paul D.
Published in Acta crystallographica. Section D, Biological crystallography. (01.08.2024)
Published in Acta crystallographica. Section D, Biological crystallography. (01.08.2024)
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Journal Article
CERES: a cryo‐EM re‐refinement system for continuous improvement of deposited models
Liebschner, Dorothee, Afonine, Pavel V., Moriarty, Nigel W., Poon, Billy K., Chen, Vincent B., Adams, Paul D.
Published in Acta crystallographica. Section D, Biological crystallography. (01.01.2021)
Published in Acta crystallographica. Section D, Biological crystallography. (01.01.2021)
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