The Genome of Akkermansia muciniphila, a Dedicated Intestinal Mucin Degrader, and Its Use in Exploring Intestinal Metagenomes
Passel, M.W.J. van, Kant, R, Zoetendal, E.G, Plugge, C.M, Derrien, M.M.N, Malfatti, S.A, Palva, A, Vos, W.M. de, Smidt, H
Published in PloS one (03.03.2011)
Published in PloS one (03.03.2011)
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Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
Mason, Olivia U, Hazen, Terry C, Borglin, Sharon, Chain, Patrick S G, Dubinsky, Eric A, Fortney, Julian L, Han, James, Holman, Hoi-Ying N, Hultman, Jenni, Lamendella, Regina, Mackelprang, Rachel, Malfatti, Stephanie, Tom, Lauren M, Tringe, Susannah G, Woyke, Tanja, Zhou, Jizhong, Rubin, Edward M, Jansson, Janet K
Published in The ISME Journal (01.09.2012)
Published in The ISME Journal (01.09.2012)
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Ecological roles of dominant and rare prokaryotes in acid mine drainage revealed by metagenomics and metatranscriptomics
Hua, Zheng-Shuang, Han, Yu-Jiao, Chen, Lin-Xing, Liu, Jun, Hu, Min, Li, Sheng-Jin, Kuang, Jia-Liang, Chain, Patrick SG, Huang, Li-Nan, Shu, Wen-Sheng
Published in The ISME Journal (01.06.2015)
Published in The ISME Journal (01.06.2015)
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The Genome Sequence of the Obligately Chemolithoautotrophic, Facultatively Anaerobic Bacterium Thiobacillus denitrificans
BELLER, Harry R, CHAIN, Patrick S. G, LETAIN, Tracy E, CHAKICHERLA, Anu, LARIMER, Frank W, RICHARDSON, Paul M, COLEMAN, Matthew A, WOOD, Ann P, KELLY, Donovan P
Published in Journal of Bacteriology (01.02.2006)
Published in Journal of Bacteriology (01.02.2006)
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Identification of mobile genetic elements with geNomad
Camargo, Antonio Pedro, Roux, Simon, Schulz, Frederik, Babinski, Michal, Xu, Yan, Hu, Bin, Chain, Patrick S. G., Nayfach, Stephen, Kyrpides, Nikos C.
Published in Nature biotechnology (01.08.2024)
Published in Nature biotechnology (01.08.2024)
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Complete Genome Sequence of Nitrosospira multiformis, an Ammonia-Oxidizing Bacterium from the Soil Environment
Norton, Jeanette M, Klotz, Martin G, Stein, Lisa Y, Arp, Daniel J, Bottomley, Peter J, Chain, Patrick S.G, Hauser, Loren J, Land, Miriam L, Larimer, Frank W, Shin, Maria W, Starkenburg, Shawn R
Published in Applied and Environmental Microbiology (01.06.2008)
Published in Applied and Environmental Microbiology (01.06.2008)
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Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres
Swan, Brandon K, Chaffin, Mark D, Martinez-Garcia, Manuel, Morrison, Hilary G, Field, Erin K, Poulton, Nicole J, Masland, E Dashiell P, Harris, Christopher C, Sczyrba, Alexander, Chain, Patrick S G, Koren, Sergey, Woyke, Tanja, Stepanauskas, Ramunas
Published in PloS one (01.04.2014)
Published in PloS one (01.04.2014)
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Intrahost SARS-CoV-2 k-mer Identification Method (iSKIM) for Rapid Detection of Mutations of Concern Reveals Emergence of Global Mutation Patterns
Thommana, Ashley, Shakya, Migun, Gandhi, Jaykumar, Fung, Christian K, Chain, Patrick S. G, Maljkovic Berry, Irina, Conte, Matthew A
Published in Viruses (27.09.2022)
Published in Viruses (27.09.2022)
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Whole-Genome-Based Phylogeny and Divergence of the Genus Brucella
Foster, Jeffrey T, Beckstrom-Sternberg, Stephen M, Pearson, Talima, Beckstrom-Sternberg, James S, Chain, Patrick S G, Roberto, Francisco F, Hnath, Jonathan, Brettin, Tom, Keim, Paul
Published in Journal of Bacteriology (01.04.2009)
Published in Journal of Bacteriology (01.04.2009)
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Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows
Connor, Ryan, Shakya, Migun, Yarmosh, David A, Maier, Wolfgang, Martin, Ross, Bradford, Rebecca, Brister, J Rodney, Chain, Patrick S G, Copeland, Courtney A, di Iulio, Julia, Hu, Bin, Ebert, Philip, Gunti, Jonathan, Jin, Yumi, Katz, Kenneth S, Kochergin, Andrey, LaRosa, Tré, Li, Jiani, Li, Po-E, Lo, Chien-Chi, Rashid, Sujatha, Maiorova, Evguenia S, Xiao, Chunlin, Zalunin, Vadim, Purcell, Lisa, Pruitt, Kim D
Published in Viruses (01.03.2024)
Published in Viruses (01.03.2024)
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Complete Genome Sequence of Yersinia pestis Strains Antiqua and Nepal516: Evidence of Gene Reduction in an Emerging Pathogen
Chain, Patrick S G, Hu, Ping, Malfatti, Stephanie A, Radnedge, Lyndsay, Larimer, Frank, Vergez, Lisa M, Worsham, Patricia, Chu, May C, Andersen, Gary L
Published in Journal of Bacteriology (01.06.2006)
Published in Journal of Bacteriology (01.06.2006)
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The impact of genome analyses on our understanding of ammonia-oxidizing bacteria
Arp, Daniel J, Chain, Patrick S G, Klotz, Martin G
Published in Annual review of microbiology (01.01.2007)
Published in Annual review of microbiology (01.01.2007)
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Journal Article
Comparative genomic and phenotypic characterization of invasive non-typhoidal Salmonella isolates from Siaya, Kenya
Kubicek-Sutherland, Jessica Z, Xie, Gary, Shakya, Migun, Dighe, Priya K, Jacobs, Lindsey L, Daligault, Hajnalka, Davenport, Karen, Stromberg, Loreen R, Stromberg, Zachary R, Cheng, Qiuying, Kempaiah, Prakasha, Ong'echa, John Michael, Otieno, Vincent, Raballah, Evans, Anyona, Samuel, Ouma, Collins, Chain, Patrick S G, Perkins, Douglas J, Mukundan, Harshini, McMahon, Benjamin H, Doggett, Norman A
Published in PLoS neglected tropical diseases (01.02.2021)
Published in PLoS neglected tropical diseases (01.02.2021)
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Genome of the Epsilonproteobacterial Chemolithoautotroph Sulfurimonas denitrificans
Sievert, Stefan M, Scott, Kathleen M, Klotz, Martin G, Chain, Patrick S G, Hauser, Loren J, Hemp, James, Hügler, Michael, Land, Miriam, Lapidus, Alla, Larimer, Frank W, Lucas, Susan, Malfatti, Stephanie A, Meyer, Folker, Paulsen, Ian T, Ren, Qinghu, Simon, Jörg
Published in Applied and Environmental Microbiology (01.02.2008)
Published in Applied and Environmental Microbiology (01.02.2008)
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Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter
Starkenburg, Shawn R, Larimer, Frank W, Stein, Lisa Y, Klotz, Martin G, Chain, Patrick S.G, Sayavedra-Soto, Luis A, Poret-Peterson, Amisha T, Gentry, Mira E, Arp, Daniel J, Ward, Bess, Bottomley, Peter J
Published in Applied and Environmental Microbiology (01.05.2008)
Published in Applied and Environmental Microbiology (01.05.2008)
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