FDA Escherichia coli Identification (FDA-ECID) Microarray: a Pangenome Molecular Toolbox for Serotyping, Virulence Profiling, Molecular Epidemiology, and Phylogeny
Patel, Isha R, Gangiredla, Jayanthi, Lacher, David W, Mammel, Mark K, Jackson, Scott A, Lampel, Keith A, Elkins, Christopher A
Published in Applied and environmental microbiology (01.06.2016)
Published in Applied and environmental microbiology (01.06.2016)
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Journal Article
Integration of AI-2 Based Cell-Cell Signaling with Metabolic Cues in Escherichia coli
Mitra, Arindam, Herren, Christopher D, Patel, Isha R, Coleman, Adam, Mukhopadhyay, Suman
Published in PloS one (30.06.2016)
Published in PloS one (30.06.2016)
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Journal Article
DNA microarray-based assessment of virulence potential of Shiga toxin gene-carrying Escherichia coli O104:H7 isolated from feedlot cattle feces
Shridhar, Pragathi B, Patel, Isha R, Gangiredla, Jayanthi, Noll, Lance W, Shi, Xiaorong, Bai, Jianfa, Elkins, Christopher A, Strockbine, Nancy, Nagaraja, T G
Published in PloS one (30.04.2018)
Published in PloS one (30.04.2018)
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Journal Article
Linking Genomo- and Pathotype: Exploiting the Zebrafish Embryo Model to Investigate the Divergent Virulence Potential among Cronobacter spp
Eshwar, Athmanya K, Tall, Ben D, Gangiredla, Jayanthi, Gopinath, Gopal R, Patel, Isha R, Neuhauss, Stephan C F, Stephan, Roger, Lehner, Angelika
Published in PloS one (29.06.2016)
Published in PloS one (29.06.2016)
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Journal Article
Analysis of the Molecular Diversity Among Cronobacter Species Isolated From Filth Flies Using Targeted PCR, Pan Genomic DNA Microarray, and Whole Genome Sequencing Analyses
Jang, Hyein, Chase, Hannah R, Gangiredla, Jayanthi, Grim, Christopher J, Patel, Isha R, Kothary, Mahendra H, Jackson, Scott A, Mammel, Mark K, Carter, Laurenda, Negrete, Flavia, Finkelstein, Samantha, Weinstein, Leah, Yan, QiongQiong, Iversen, Carol, Pagotto, Franco, Stephan, Roger, Lehner, Angelika, Eshwar, Athmanya K, Fanning, Seamus, Farber, Jeffery, Gopinath, Gopal R, Tall, Ben D, Pava-Ripoll, Monica
Published in Frontiers in microbiology (25.09.2020)
Published in Frontiers in microbiology (25.09.2020)
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Comparative Genomic Characterization of the Highly Persistent and Potentially Virulent Cronobacter sakazakii ST83, CC65 Strain H322 and Other ST83 Strains
Chase, Hannah R, Gopinath, Gopal R, Eshwar, Athmanya K, Stoller, Andrea, Fricker-Feer, Claudia, Gangiredla, Jayanthi, Patel, Isha R, Cinar, Hediye N, Jeong, HyeJin, Lee, ChaeYoon, Negrete, Flavia, Finkelstein, Samantha, Stephan, Roger, Tall, Ben D, Lehner, Angelika
Published in Frontiers in microbiology (26.06.2017)
Published in Frontiers in microbiology (26.06.2017)
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Journal Article
Genetic Analysis of Virulence Potential of Escherichia coli O104 Serotypes Isolated From Cattle Feces Using Whole Genome Sequencing
Shridhar, Pragathi B, Patel, Isha R, Gangiredla, Jayanthi, Noll, Lance W, Shi, Xiaorong, Bai, Jianfa, Elkins, Christopher A, Strockbine, Nancy A, Nagaraja, T G
Published in Frontiers in microbiology (01.03.2018)
Published in Frontiers in microbiology (01.03.2018)
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Journal Article
The Secretion of Toxins and Other Exoproteins of Cronobacter : Role in Virulence, Adaption, and Persistence
Jang, Hyein, Gopinath, Gopal R, Eshwar, Athmanya, Srikumar, Shabarinath, Nguyen, Scott, Gangiredla, Jayanthi, Patel, Isha R, Finkelstein, Samantha B, Negrete, Flavia, Woo, JungHa, Lee, YouYoung, Fanning, Séamus, Stephan, Roger, Tall, Ben D, Lehner, Angelika
Published in Microorganisms (Basel) (08.02.2020)
Published in Microorganisms (Basel) (08.02.2020)
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Journal Article
Characterization of Cronobacter sakazakii Strains Originating from Plant-Origin Foods Using Comparative Genomic Analyses and Zebrafish Infectivity Studies
Jang, Hyein, Eshwar, Athmanya, Lehner, Angelika, Gangiredla, Jayanthi, Patel, Isha R., Beaubrun, Junia Jean-Gilles, Chase, Hannah R., Negrete, Flavia, Finkelstein, Samantha, Weinstein, Leah M., Ko, Katie, Addy, Nicole, Ewing, Laura, Woo, Jungha, Lee, Youyoung, Seo, Kunho, Jaradat, Ziad, Srikumar, Shabarinath, Fanning, Séamus, Stephan, Roger, Tall, Ben D., Gopinath, Gopal R.
Published in Microorganisms (Basel) (11.07.2022)
Published in Microorganisms (Basel) (11.07.2022)
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Phylogenomic Analysis of Salmonella enterica subsp. enterica Serovar Bovismorbificans from Clinical and Food Samples Using Whole Genome Wide Core Genes and kmer Binning Methods to Identify Two Distinct Polyphyletic Genome Pathotypes
Gopinath, Gopal R, Jang, Hyein, Beaubrun, Junia Jean-Gilles, Gangiredla, Jayanthi, Mammel, Mark K, Müller, Andrea, Tamber, Sandeep, Patel, Isha R, Ewing, Laura, Weinstein, Leah M, Wang, Caroline Z, Finkelstein, Samantha, Negrete, Flavia, Muruvanda, Tim, Allard, Marc, Sockett, Donald C, Pagotto, Franco, Tall, Ben D, Stephan, Roger
Published in Microorganisms (Basel) (11.06.2022)
Published in Microorganisms (Basel) (11.06.2022)
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Journal Article
Rapid Genomic-Scale Analysis of Escherichia coli O104:H4 by Using High-Resolution Alternative Methods to Next-Generation Sequencing
JACKSON, Scott A, KOTEWICZ, Michael L, PATEL, Isha R, LACHER, David W, GANGIREDLA, Jayanthi, ELKINS, Christopher A
Published in Applied and Environmental Microbiology (01.03.2012)
Published in Applied and Environmental Microbiology (01.03.2012)
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Journal Article
Draft Genome Sequences of Escherichia albertii, Escherichia fergusonii, and Strains Belonging to Six Cryptic Lineages of Escherichia spp
Gangiredla, Jayanthi, Mammel, Mark K, Barnaba, Tammy J, Tartera, Carmen, Gebru, Solomon T, Patel, Isha R, Leonard, Susan R, Kotewicz, Michael L, Lampel, Keith A, Elkins, Christopher A, Lacher, David W
Published in Genome announcements (Washington, DC) (03.05.2018)
Published in Genome announcements (Washington, DC) (03.05.2018)
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An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays
Fang, Hong, Xu, Joshua, Ding, Don, Jackson, Scott A, Patel, Isha R, Frye, Jonathan G, Zou, Wen, Nayak, Rajesh, Foley, Steven, Chen, James, Su, Zhenqiang, Ye, Yanbin, Turner, Steve, Harris, Steve, Zhou, Guangxu, Cerniglia, Carl, Tong, Weida
Published in BMC bioinformatics (07.10.2010)
Published in BMC bioinformatics (07.10.2010)
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Development and validation of an improved method for the detection of Salmonella in cinnamon bark and oregano leaves using the adsorbent beta zeolite in the pre-enrichment media
Babu, Uma S., Harrison, Lisa M., Patel, Isha R., Mammel, Mark K., Bigley, Elmer, Balan, Kannan V.
Published in Food microbiology (01.12.2021)
Published in Food microbiology (01.12.2021)
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Journal Article
Virulence, antimicrobial susceptibility and phylogenetic analysis of Cronobacter sakazakii isolates of food origins from Jordan
Jaradat, Ziad W., Al‐Mousa, Waseem A., Elbetieha, Ahmed M., Ababneh, Qutaiba O., Al‐Nabulsi, Anas A., Jang, Hyein, Gangiredla, Jayanthi, Patel, Isha R., Gopinath, Gopal R., Tall, Ben D.
Published in Journal of applied microbiology (01.10.2022)
Published in Journal of applied microbiology (01.10.2022)
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Journal Article
Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols
Forry, Samuel P., Servetas, Stephanie L., Kralj, Jason G., Soh, Keng, Hadjithomas, Michalis, Cano, Raul, Carlin, Martha, Amorim, Maria G. de, Auch, Benjamin, Bakker, Matthew G., Bartelli, Thais F., Bustamante, Juan P., Cassol, Ignacio, Chalita, Mauricio, Dias-Neto, Emmanuel, Duca, Aaron Del, Gohl, Daryl M., Kazantseva, Jekaterina, Haruna, Muyideen T., Menzel, Peter, Moda, Bruno S., Neuberger-Castillo, Lorieza, Nunes, Diana N., Patel, Isha R., Peralta, Rodrigo D., Saliou, Adrien, Schwarzer, Rolf, Sevilla, Samantha, Takenaka, Isabella K. T. M., Wang, Jeremy R., Knight, Rob, Gevers, Dirk, Jackson, Scott A.
Published in Scientific reports (29.04.2024)
Published in Scientific reports (29.04.2024)
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Journal Article
DNA Microarray-Based Genomic Characterization of the Pathotypes of Escherichia coli O26, O45, O103, O111, and O145 Isolated from Feces of Feedlot Cattle
Shridhar, Pragathi B, Patel, Isha R, Gangiredla, Jayanthi, Noll, Lance W, Shi, Xiaorong, Bai, Jianfa, Nagaraja, T G
Published in Journal of food protection (01.03.2019)
Published in Journal of food protection (01.03.2019)
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