Pan-mammalian analysis of molecular constraints underlying extended lifespan
Kowalczyk, Amanda, Partha, Raghavendran, Clark, Nathan L, Chikina, Maria
Published in eLife (11.02.2020)
Published in eLife (11.02.2020)
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Journal Article
Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals
Meyer, Wynn K, Jamison, Jerrica, Richter, Rebecca, Woods, Stacy E, Partha, Raghavendran, Kowalczyk, Amanda, Kronk, Charles, Chikina, Maria, Bonde, Robert K, Crocker, Daniel E, Gaspard, Joseph, Lanyon, Janet M, Marsillach, Judit, Furlong, Clement E, Clark, Nathan L
Published in Science (American Association for the Advancement of Science) (10.08.2018)
Published in Science (American Association for the Advancement of Science) (10.08.2018)
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Journal Article
Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling
Partha, Raghavendran, Chauhan, Bharesh K, Ferreira, Zelia, Robinson, Joseph D, Lathrop, Kira, Nischal, Ken K, Chikina, Maria, Clark, Nathan L
Published in eLife (16.10.2017)
Published in eLife (16.10.2017)
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Journal Article
A Drosophila screen identifies NKCC1 as a modifier of NGLY1 deficiency
Talsness, Dana M, Owings, Katie G, Coelho, Emily, Mercenne, Gaelle, Pleinis, John M, Partha, Raghavendran, Hope, Kevin A, Zuberi, Aamir R, Clark, Nathan L, Lutz, Cathleen M, Rodan, Aylin R, Chow, Clement Y
Published in eLife (14.12.2020)
Published in eLife (14.12.2020)
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Journal Article
Expanded COVID-19 phenotype definitions reveal distinct patterns of genetic association and protective effects
Roberts, Genevieve H. L., Partha, Raghavendran, Rhead, Brooke, Knight, Spencer C., Park, Danny S., Coignet, Marie V., Zhang, Miao, Berkowitz, Nathan, Turrisini, David A., Gaddis, Michael, McCurdy, Shannon R., Pavlovic, Milos, Ruiz, Luong, Sass, Chodon, Haug Baltzell, Asher K., Guturu, Harendra, Girshick, Ahna R., Ball, Catherine A., Hong, Eurie L., Rand, Kristin A.
Published in Nature genetics (01.04.2022)
Published in Nature genetics (01.04.2022)
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Journal Article
MAIA, Fc receptor-like 3, supersedes JUNO as IZUMO1 receptor during human fertilization
Vondrakova, Jana, Frolikova, Michaela, Ded, Lukas, Cerny, Jiri, Postlerova, Pavla, Palenikova, Veronika, Simonik, Ondrej, Nahacka, Zuzana, Basus, Krystof, Valaskova, Eliska, Machan, Radek, Pacey, Allan, Holubcova, Zuzana, Koubek, Pavel, Ezrova, Zuzana, Park, Soojin, Liu, Ruiwu, Partha, Raghavendran, Clark, Nathan, Neuzil, Jiri, Ikawa, Masahito, Erickson, Kent, Lam, Kit S, Moore, Harry, Komrskova, Katerina
Published in Science advances (09.09.2022)
Published in Science advances (09.09.2022)
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Journal Article
RERconverge: an R package for associating evolutionary rates with convergent traits
Kowalczyk, Amanda, Meyer, Wynn K, Partha, Raghavendran, Mao, Weiguang, Clark, Nathan L, Chikina, Maria
Published in Bioinformatics (01.11.2019)
Published in Bioinformatics (01.11.2019)
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Journal Article
Robust Method for Detecting Convergent Shifts in Evolutionary Rates
Partha, Raghavendran, Kowalczyk, Amanda, Clark, Nathan L, Chikina, Maria
Published in Molecular biology and evolution (01.08.2019)
Published in Molecular biology and evolution (01.08.2019)
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Journal Article
Plastomes from tribe Plantagineae (Plantaginaceae) reveal infrageneric structural synapormorphies and localized hypermutation for Plantago and functional loss of ndh genes from Littorella
Mower, Jeffrey P., Guo, Wenhu, Partha, Raghavendran, Fan, Weishu, Levsen, Nick, Wolff, Kirsten, Nugent, Jacqueline M., Pabón-Mora, Natalia, González, Favio
Published in Molecular phylogenetics and evolution (01.09.2021)
Published in Molecular phylogenetics and evolution (01.09.2021)
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Journal Article
Expanded COVID-19 phenotype definitions reveal distinct patterns of genetic association and protective effects
Roberts, Genevieve H. L., Partha, Raghavendran, Rhead, Brooke, Knight, Spencer C., Park, Danny S., Coignet, Marie V., Zhang, Miao, Berkowitz, Nathan, Turrisini, David A., Gaddis, Michael, McCurdy, Shannon R., Pavlovic, Milos, Ruiz, Luong, Sass, Chodon, Haug Baltzell, Asher K., Guturu, Harendra, Girshick, Ahna R., Ball, Catherine A., Hong, Eurie L., Rand, Kristin A.
Published in Nature genetics (01.04.2022)
Published in Nature genetics (01.04.2022)
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Journal Article
Robust methods for detecting convergent shifts in evolutionary rates
Raghavendran Partha, Kowalczyk, Amanda, Clark, Nathan L, Chikina, Maria
Published in bioRxiv (30.10.2018)
Published in bioRxiv (30.10.2018)
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Paper
A Drosophila natural variation screen identifies NKCC1 as a substrate of NGLY1 deglycosylation and a modifier of NGLY1 deficiency
Talsness, Dana M, Owings, Katie G, Coelho, Emily, Mercenne, Gaelle, Pleinis, John M, Zuberi, Aamir R, Raghavendran Partha, Clark, Nathan L, Lutz, Cathleen M, Rodan, Aylin R, Chow, Clement Y
Published in bioRxiv (14.04.2020)
Published in bioRxiv (14.04.2020)
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Paper