Modulation of miR‐29 expression by alpha‐fetoprotein is linked to the hepatocellular carcinoma epigenome
Parpart, Sonya, Roessler, Stephanie, Dong, Fei, Rao, Vinay, Takai, Atsushi, Ji, Junfang, Qin, Lun‐Xiu, Ye, Qing‐Hai, Jia, Hu‐Liang, Tang, Zhao‐You, Wang, Xin Wei
Published in Hepatology (Baltimore, Md.) (01.09.2014)
Published in Hepatology (Baltimore, Md.) (01.09.2014)
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Journal Article
Direct detection of early-stage cancers using circulating tumor DNA
Phallen, Jillian, Sausen, Mark, Adleff, Vilmos, Leal, Alessandro, Hruban, Carolyn, White, James, Anagnostou, Valsamo, Fiksel, Jacob, Cristiano, Stephen, Papp, Eniko, Speir, Savannah, Reinert, Thomas, Orntoft, Mai-Britt Worm, Woodward, Brian D, Murphy, Derek, Parpart-Li, Sonya, Riley, David, Nesselbush, Monica, Sengamalay, Naomi, Georgiadis, Andrew, Li, Qing Kay, Madsen, Mogens Rørbæk, Mortensen, Frank Viborg, Huiskens, Joost, Punt, Cornelis, van Grieken, Nicole, Fijneman, Remond, Meijer, Gerrit, Husain, Hatim, Scharpf, Robert B, Diaz, Jr, Luis A, Jones, Siân, Angiuoli, Sam, Ørntoft, Torben, Nielsen, Hans Jørgen, Andersen, Claus Lindbjerg, Velculescu, Victor E
Published in Science translational medicine (16.08.2017)
Published in Science translational medicine (16.08.2017)
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A machine learning approach for somatic mutation discovery
Wood, Derrick E, White, James R, Georgiadis, Andrew, Van Emburgh, Beth, Parpart-Li, Sonya, Mitchell, Jason, Anagnostou, Valsamo, Niknafs, Noushin, Karchin, Rachel, Papp, Eniko, McCord, Christine, LoVerso, Peter, Riley, David, Diaz, Jr, Luis A, Jones, Siân, Sausen, Mark, Velculescu, Victor E, Angiuoli, Samuel V
Published in Science translational medicine (05.09.2018)
Published in Science translational medicine (05.09.2018)
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Analytical validation of a multi-cancer early detection test with cancer signal origin using a cell-free DNA-based targeted methylation assay
Alexander, Gregory E, Lin, Wendy, Ortega, Fabian E, Ramaiah, Madhuvanthi, Jung, Byoungsok, Ji, Lijuan, Revenkova, Ekaterina, Shah, Payal, Croisetiere, Christian, Berman, Jennifer R, Eubank, Lane, Naik, Gunjan, Brooks, Jacqueline, Mich, Andrea, Shojaee, Seyedmehdi, Ronaghi, Neda, Chawla, Hemanshi, Hou, Xinyi, Liu, Qinwen, Yakym, Christopher-James A V, Moradi, Patriss Wais, Halks-Miller, Meredith, Aravanis, Alexander M, Parpart-Li, Sonya, Hunkapiller, Nathan
Published in PloS one (14.04.2023)
Published in PloS one (14.04.2023)
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Journal Article
Integrative genomics identifies YY1AP1 as an oncogenic driver in EpCAM(+) AFP(+) hepatocellular carcinoma
Zhao, X, Parpart, S, Takai, A, Roessler, S, Budhu, A, Yu, Z, Blank, M, Zhang, Y E, Jia, H-L, Ye, Q-H, Qin, L-X, Tang, Z-Y, Thorgeirsson, S S, Wang, X W
Published in Oncogene (24.09.2015)
Published in Oncogene (24.09.2015)
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Journal Article
Effects of mismatches on DNA as an isothermal assembly and disassembly tool
Parpart, Sonya Teresa, Tison, Christopher Kirby, Milam, Valeria Tohver
Published in Soft matter (01.01.2010)
Published in Soft matter (01.01.2010)
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Journal Article
Abstract 5183: Modulation of miR-29 expression by alpha-fetoprotein is linked to the hepatocellular carcinoma epigenome
Parpart, Sonya T., Roessler, Stephanie, Dong, Fei, Rao, Vinay, Ji, Junfang, Qin, Lun–Xiu, Ye, Qing–Hai, Tang, Zhao–You, Jia, Hu–Liang, Wang, Xin Wei
Published in Cancer research (Chicago, Ill.) (01.10.2014)
Published in Cancer research (Chicago, Ill.) (01.10.2014)
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Abstract C20: The epigenomic fingerprint of hepatocellular carcinoma
Parpart, Sonya, Roessler, Stephanie, Dong, Fei, Rao, Vinay, Loffredo, Chris, Wang, Xin Wei
Published in Cancer research (Chicago, Ill.) (15.09.2011)
Published in Cancer research (Chicago, Ill.) (15.09.2011)
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Journal Article
Effects of mismatches on DNA as an isothermal assembly and disassembly toolElectronic supplementary information (ESI) available: Confocal micrographs of DNA-mediated assembly and disassembly using perfectly matched duplexes. See DOI: 10.1039/b926665h
Parpart, Sonya Teresa, Tison, Christopher Kirby, Milam, Valeria Tohver
Year of Publication 03.08.2010
Year of Publication 03.08.2010
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Journal Article
Personalized genomic analyses for cancer mutation discovery and interpretation
Jones, Siân, Anagnostou, Valsamo, Lytle, Karli, Parpart-Li, Sonya, Nesselbush, Monica, Riley, David R, Shukla, Manish, Chesnick, Bryan, Kadan, Maura, Papp, Eniko, Galens, Kevin G, Murphy, Derek, Zhang, Theresa, Kann, Lisa, Sausen, Mark, Angiuoli, Samuel V, Diaz, Jr, Luis A, Velculescu, Victor E
Published in Science translational medicine (15.04.2015)
Published in Science translational medicine (15.04.2015)
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The Effect of Preservative and Temperature on the Analysis of Circulating Tumor DNA
Parpart-Li, Sonya, Bartlett, Bjarne, Popoli, Maria, Adleff, Vilmos, Tucker, Laura, Steinberg, Rebecca, Georgiadis, Andrew, Phallen, Jill, Brahmer, Julie, Azad, Nilo, Browner, Ilene, Laheru, Daniel, Velculescu, Victor E, Sausen, Mark, Diaz, Jr, Luis A
Published in Clinical cancer research (15.05.2017)
Published in Clinical cancer research (15.05.2017)
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Journal Article
Clinical implications of genomic alterations in the tumour and circulation of pancreatic cancer patients
Sausen, Mark, Phallen, Jillian, Adleff, Vilmos, Jones, Siân, Leary, Rebecca J, Barrett, Michael T, Anagnostou, Valsamo, Parpart-Li, Sonya, Murphy, Derek, Kay Li, Qing, Hruban, Carolyn A, Scharpf, Rob, White, James R, O'Dwyer, Peter J, Allen, Peter J, Eshleman, James R, Thompson, Craig B, Klimstra, David S, Linehan, David C, Maitra, Anirban, Hruban, Ralph H, Diaz, Jr, Luis A, Von Hoff, Daniel D, Johansen, Julia S, Drebin, Jeffrey A, Velculescu, Victor E
Published in Nature communications (07.07.2015)
Published in Nature communications (07.07.2015)
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Abstract 112: Analytical performance of a cfDNA-based targeted methylation multi-cancer early detection test for population-scale screening
Alexander, Gregory E., Jung, Byoungsok, Ji, Lijuan, Revenkova, Ekaterina, Shah, Payal, Brooks, Jacqueline, Carter, Jeremy, Dong, Zhao, Eubank, Lane, Hosseini, Maryam, Hou, Xinyi, Kiarie, Hannah, Ronaghi, Neda, Ortega, Fabian E., Ramaiah, Madhuvanthi, Rhodes, Kate, Shaknovich, Rita, Shojaee, Seyedmehdi, Parpart-Li, Sonya, Hunkapiller, Nathan
Published in Cancer research (Chicago, Ill.) (01.07.2021)
Published in Cancer research (Chicago, Ill.) (01.07.2021)
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Journal Article
Abstract 1286: Analytical validation of an integrated next-generation sequencing pan-cancer liquid biopsy approach for detection of microsatellite instability
Georgiadis, Andrew, Wood, Derrick, Murphy, Derek, Parpart-Li, Sonya, Riley, David, Sengamalay, Naomi, Novak, Marian, Jones, Sian, Angiuoli, Samuel A., Sausen, Mark
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Abstract 721: Analytical validation of a multi-cancer early detection test with tissue localization using a cell-free DNA-based targeted methylation assay
Alexander, Gregory, Lin, Wendy, Ramaiah, Madhuvanthi, Jung, Byoungsok, Ji, Lijuan, Revenkova, Ekaterina, Shah, Payal, Croisetiere, Christian, Berman, Jennifer, Eubank, Lane, Naik, Gunjan, Brooks, Jacqueline, Mich, Andrea, Shojaee, Seyedmehdi, Ronaghi, Neda, Chawla, Hemanshi, Hou, Xinyi, Liu, Qinwen, Yakym, Christopher, Moradi, Patriss Wais, Halks-Miller, Meredith, Hunkapiller, Nathan, Parpart-Li, Sonya, Aravanis, Alexander
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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