The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2
Pekar, Jonathan E, Magee, Andrew, Parker, Edyth, Moshiri, Niema, Izhikevich, Katherine, Havens, Jennifer L, Gangavarapu, Karthik, Malpica Serrano, Lorena Mariana, Crits-Christoph, Alexander, Matteson, Nathaniel L, Zeller, Mark, Levy, Joshua I, Wang, Jade C, Hughes, Scott, Lee, Jungmin, Park, Heedo, Park, Man-Seong, Ching Zi Yan, Katherine, Lin, Raymond Tzer Pin, Mat Isa, Mohd Noor, Noor, Yusuf Muhammad, Vasylyeva, Tetyana I, Garry, Robert F, Holmes, Edward C, Rambaut, Andrew, Suchard, Marc A, Andersen, Kristian G, Worobey, Michael, Wertheim, Joel O
Published in Science (American Association for the Advancement of Science) (26.08.2022)
Published in Science (American Association for the Advancement of Science) (26.08.2022)
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Incomplete genetic reconstitution of B cell pools contributes to prolonged immunosuppression after measles
Petrova, Velislava N, Sawatsky, Bevan, Han, Alvin X, Laksono, Brigitta M, Walz, Lisa, Parker, Edyth, Pieper, Kathrin, Anderson, Carl A, de Vries, Rory D, Lanzavecchia, Antonio, Kellam, Paul, von Messling, Veronika, de Swart, Rik L, Russell, Colin A
Published in Science immunology (01.11.2019)
Published in Science immunology (01.11.2019)
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Regional connectivity drove bidirectional transmission of SARS-CoV-2 in the Middle East during travel restrictions
Parker, Edyth, Anderson, Catelyn, Zeller, Mark, Tibi, Ahmad, Havens, Jennifer L., Laroche, Geneviève, Benlarbi, Mehdi, Ariana, Ardeshir, Robles-Sikisaka, Refugio, Latif, Alaa Abdel, Watts, Alexander, Awidi, Abdalla, Jaradat, Saied A., Gangavarapu, Karthik, Ramesh, Karthik, Kurzban, Ezra, Matteson, Nathaniel L., Han, Alvin X., Hughes, Laura D., McGraw, Michelle, Spencer, Emily, Nicholson, Laura, Khan, Kamran, Suchard, Marc A., Wertheim, Joel O., Wohl, Shirlee, Côté, Marceline, Abdelnour, Amid, Andersen, Kristian G., Abu-Dayyeh, Issa
Published in Nature communications (15.08.2022)
Published in Nature communications (15.08.2022)
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Whole genome sequencing unravels cryptic circulation of divergent dengue virus lineages in the rainforest region of Nigeria
Onoja, Bernard Anyebe, Oguzie, Judith Uche, George, Uwem Etop, Asoh, Kaego Emmanuel, Ajayi, Philip, Omofaye, Toluwanimi Faithful, Igeleke, Imafidon Oluwatoyin, Eromon, Philomena, Harouna, Soumare, Parker, Edyth, Adeniji, Adekunle Johnson, Happi, Christian T
Published in Emerging microbes & infections (01.12.2024)
Published in Emerging microbes & infections (01.12.2024)
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Lassa virus in novel hosts: insights into the epidemiology of lassa virus infections in southern Nigeria
Happi, Anise Nkenjop, Ogunsanya, Olusola Akinola, Ayinla, Akeemat Opeyemi, Sijuwola, Ayotunde Elijah, Saibu, Femi Mudasiru, Akano, Kazeem, Nwofoke, Cecilia, Elias, Obineche Tobias, Achonduh-Atijegbe, Olivia, Daodu, Richard Olumide, Adedokun, Oluwatobi Abel, Adeyemo, Abraham, Ogundana, Kehinde Ebenezer, Lawal, Omolola Zaheedat, Parker, Edyth, Nosamiefan, Iguosadolo, Okolie, Johnson, Parker, Zahra F, McCauley, Melanie D, Eller, Leigh Anne, Lombardi, Kara, Tiamiyu, Abdulwasiu Bolaji, Iroezindu, Michael, Akinwale, Edward, Njatou, Thierry Lamare Fouapon Assedi, Mebrahtu, Tsedal, Broach, Erica, Zuppe, Anastasia, Prins, Petra, Lay, Jenny, Amare, Mihret, Modjarrad, Kayvon, Collins, Natalie D, Vasan, Sandhya, Tucker, Cynthia, Daye, Sharon, Happi, Christian Tientcha
Published in Emerging microbes & infections (01.12.2024)
Published in Emerging microbes & infections (01.12.2024)
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Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
Han, Alvin X, Parker, Edyth, Scholer, Frits, Maurer-Stroh, Sebastian, Russell, Colin A
Published in Molecular biology and evolution (01.07.2019)
Published in Molecular biology and evolution (01.07.2019)
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Hepatitis C Virus Transmission Among Men Who Have Sex With Men in Amsterdam: External Introductions May Complicate Microelimination Efforts
Koopsen, Jelle, Parker, Edyth, Han, Alvin X, van de Laar, Thijs, Russell, Colin, Hoornenborg, Elske, Prins, Maria, van der Valk, Marc, Schinkel, Janke
Published in Clinical infectious diseases (15.06.2021)
Published in Clinical infectious diseases (15.06.2021)
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SARS-CoV-2 diagnostic testing rates determine the sensitivity of genomic surveillance programs
Han, Alvin X., Toporowski, Amy, Sacks, Jilian A., Perkins, Mark D., Briand, Sylvie, van Kerkhove, Maria, Hannay, Emma, Carmona, Sergio, Rodriguez, Bill, Parker, Edyth, Nichols, Brooke E., Russell, Colin A.
Published in Nature genetics (01.01.2023)
Published in Nature genetics (01.01.2023)
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Introduction and Establishment of SARS-CoV-2 Gamma Variant in New York City in Early 2021
Vasylyeva, Tetyana I, Fang, Courtney E, Su, Michelle, Havens, Jennifer L, Parker, Edyth, Wang, Jade C, Zeller, Mark, Yakovleva, Anna, Hassler, Gabriel W, Chowdhury, Moinuddin A, Andersen, Kristian G, Hughes, Scott, Wertheim, Joel O
Published in The Journal of infectious diseases (13.12.2022)
Published in The Journal of infectious diseases (13.12.2022)
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Outbreak Severity of Highly Pathogenic Avian Influenza A(H5N8) Viruses Is Inversely Correlated to Polymerase Complex Activity and Interferon Induction
Vigeveno, René M, Poen, Marjolein J, Parker, Edyth, Holwerda, Melle, de Haan, Karen, van Montfort, Thijs, Lewis, Nicola S, Russell, Colin A, Fouchier, Ron A M, de Jong, Menno D, Eggink, Dirk
Published in Journal of virology (18.05.2020)
Published in Journal of virology (18.05.2020)
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Sustained human outbreak of a new MPXV clade I lineage in eastern Democratic Republic of the Congo
Vakaniaki, Emmanuel Hasivirwe, Kacita, Cris, Kinganda-Lusamaki, Eddy, O’Toole, Áine, Wawina-Bokalanga, Tony, Mukadi-Bamuleka, Daniel, Amuri-Aziza, Adrienne, Malyamungu-Bubala, Nadine, Mweshi-Kumbana, Franklin, Mutimbwa-Mambo, Léandre, Belesi-Siangoli, Freddy, Mujula, Yves, Parker, Edyth, Muswamba-Kayembe, Pauline-Chloé, Nundu, Sabin S., Lushima, Robert S., Makangara-Cigolo, Jean-Claude, Mulopo-Mukanya, Noella, Pukuta-Simbu, Elisabeth, Akil-Bandali, Prince, Kavunga, Hugo, Abdramane, Ombotimbe, Brosius, Isabel, Bangwen, Eugene, Vercauteren, Koen, Sam-Agudu, Nadia A., Mills, Edward J., Tshiani-Mbaya, Olivier, Hoff, Nicole A., Rimoin, Anne W., Hensley, Lisa E., Kindrachuk, Jason, Baxter, Cheryl, de Oliveira, Tulio, Ayouba, Ahidjo, Peeters, Martine, Delaporte, Eric, Ahuka-Mundeke, Steve, Mohr, Emma L., Sullivan, Nancy J., Muyembe-Tamfum, Jean-Jacques, Nachega, Jean B., Rambaut, Andrew, Liesenborghs, Laurens, Mbala-Kingebeni, Placide
Published in Nature medicine (01.10.2024)
Published in Nature medicine (01.10.2024)
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Inferring putative transmission clusters with Phydelity
Han, Alvin X, Parker, Edyth, Maurer-Stroh, Sebastian, Russell, Colin A
Published in Virus evolution (01.07.2019)
Published in Virus evolution (01.07.2019)
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Journal Article
Genetic and antigenic characterization of influenza A/H5N1 viruses isolated from patients in Indonesia, 2008–2015
Pawestri, Hana A., Nugraha, Arie A., Han, Alvin X., Pratiwi, Eka, Parker, Edyth, Richard, Mathilde, van der Vliet, Stefan, Fouchier, Ron A. M., Muljono, David H., de Jong, Menno D., Setiawaty, Vivi, Eggink, Dirk
Published in Virus genes (01.08.2020)
Published in Virus genes (01.08.2020)
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Journal Article
Long-term evolution of human seasonal influenza virus A(H3N2) is associated with an increase in polymerase complex activity
Vigeveno, René M, Han, Alvin X, de Vries, Robert P, Parker, Edyth, de Haan, Karen, van Leeuwen, Sarah, Hulme, Katina D, Lauring, Adam S, te Velthuis, Aartjan J W, Boons, Geert-Jan, Fouchier, Ron A M, Russell, Colin A, de Jong, Menno D, Eggink, Dirk
Published in Virus evolution (27.05.2024)
Published in Virus evolution (27.05.2024)
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Association between early life antibiotic use and childhood overweight and obesity: a narrative review
Partap, Uttara, Allcock, Sophie H., Parker, Edyth, Gurdasani, Deepti, Young, Elizabeth H., Sandhu, Manjinder S.
Published in Global health, epidemiology and genomics (2018)
Published in Global health, epidemiology and genomics (2018)
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Journal Article
The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2
Pekar, Jonathan E, Lytras, Spyros, Ghafari, Mahan, Magee, Andrew F, Parker, Edyth, Havens, Jennifer L, Katzourakis, Aris, Vasylyeva, Tetyana I, Suchard, Marc A, Hughes, Alice C, Hughes, Joseph, Robertson, David L, Dellicour, Simon, Worobey, Michael, Wertheim, Joel O, Lemey, Philippe
Published in bioRxiv (12.07.2023)
Published in bioRxiv (12.07.2023)
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Journal Article
Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans
Parker, Edyth, Omah, Ifeanyi F, Varilly, Patrick, Magee, Andrew, Ayinla, Akeemat Opeyemi, Sijuwola, Ayotunde E, Ahmed, Muhammad I, Ope-Ewe, Oludayo O, Ogunsanya, Olusola Akinola, Olono, Alhaji, Eromon, Philomena, Tomkins-Tinch, Christopher H, Otieno, James Richard, Akanbi, Olusola, Egwuenu, Abiodun, Ehiakhamen, Odianosen, Chukwu, Chimaobi, Suleiman, Kabiru, Akinpelu, Afolabi, Ahmad, Adama, Imam, Khadijah Isa, Ojedele, Richard, Oripenaye, Victor, Ikeata, Kenneth, Adelakun, Sophiyah, Olajumoke, Babatunde, Djuicy, Delia Doreen, Essengue, Loique Landry Messanga, Yifomnjou, Moïse Henri Moumbeket, Zeller, Mark, Gangavarapu, Karthik, O'Toole, Áine, Park, Daniel J, Mboowa, Gerald, Tessema, Sofonias Kifle, Tebeje, Yenew Kebede, Folarin, Onikepe, Happi, Anise, Lemey, Philippe, Suchard, Marc A, Andersen, Kristian G, Sabeti, Pardis, Rambaut, Andrew, Njoum, Richard, Ihekweazu, Chikwe, Jide, Idriss, Adetifa, Ifedayo, Happi, Christian T
Published in medRxiv : the preprint server for health sciences (19.06.2024)
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Published in medRxiv : the preprint server for health sciences (19.06.2024)
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Molecular epidemiology of recurrent zoonotic transmission of mpox virus in West Africa
Djuicy, Delia Doreen, Omah, Ifeanyi F, Parker, Edyth, Tomkins-Tinch, Christopher H, Otieno, James Richard, Yifomnjou, Moïse Henri Moumbeket, Essengue, Loique Landry Messanga, Ayinla, Akeemat Opeyemi, Sijuwola, Ayotunde E, Ahmed, Muhammad I, Ope-Ewe, Oludayo O, Ogunsanya, Olusola Akinola, Olono, Alhaji, Eromon, Philomena, Yonga, Martial Gides Wansi, Essima, Gael Dieudonné, Touoyem, Ibrahim Pascal, Mounchili, Landry Jules Mouliem, Eyangoh, Sara Irene, Esso, Linda, Nguidjol, Inès Mandah Emah, Metomb, Steve Franck, Chebo, Cornelius, Agwe, Samuel Mbah, Mossi, Hans Makembe, Bilounga, Chanceline Ndongo, Etoundi, Alain Georges Mballa, Akanbi, Olusola, Egwuenu, Abiodun, Ehiakhamen, Odianosen, Chukwu, Chimaobi, Suleiman, Kabiru, Akinpelu, Afolabi, Ahmad, Adama, Imam, Khadijah Isa, Ojedele, Richard, Oripenaye, Victor, Ikeata, Kenneth, Adelakun, Sophiyah, Olajumoke, Babatunde, O'Toole, Áine, Magee, Andrew, Zeller, Mark, Gangavarapu, Karthik, Varilly, Patrick, Park, Daniel J, Mboowa, Gerald, Tessema, Sofonias Kifle, Tebeje, Yenew Kebede, Folarin, Onikepe, Happi, Anise, Lemey, Philippe, Suchard, Marc A, Andersen, Kristian G, Sabeti, Pardis, Rambaut, Andrew, Ihekweazu, Chikwe, Jide, Idriss, Adetifa, Ifedayo, Njoum, Richard, Happi, Christian T
Published in medRxiv : the preprint server for health sciences (19.06.2024)
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Published in medRxiv : the preprint server for health sciences (19.06.2024)
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