Global site-specific N-glycosylation analysis of HIV envelope glycoprotein
Cao, Liwei, Diedrich, Jolene K., Kulp, Daniel W., Pauthner, Matthias, He, Lin, Park, Sung-Kyu Robin, Sok, Devin, Su, Ching Yao, Delahunty, Claire M., Menis, Sergey, Andrabi, Raiees, Guenaga, Javier, Georgeson, Erik, Kubitz, Michael, Adachi, Yumiko, Burton, Dennis R., Schief, William R., Yates III, John R., Paulson, James C.
Published in Nature communications (28.03.2017)
Published in Nature communications (28.03.2017)
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Journal Article
Differential processing of HIV envelope glycans on the virus and soluble recombinant trimer
Cao, Liwei, Pauthner, Matthias, Andrabi, Raiees, Rantalainen, Kimmo, Berndsen, Zachary, Diedrich, Jolene K., Menis, Sergey, Sok, Devin, Bastidas, Raiza, Park, Sung-Kyu Robin, Delahunty, Claire M., He, Lin, Guenaga, Javier, Wyatt, Richard T., Schief, William R., Ward, Andrew B., Yates, John R., Burton, Dennis R., Paulson, James C.
Published in Nature communications (12.09.2018)
Published in Nature communications (12.09.2018)
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Journal Article
Global site-specific analysis of glycoprotein N-glycan processing
Cao, Liwei, Diedrich, Jolene K, Ma, Yuanhui, Wang, Nianshuang, Pauthner, Matthias, Park, Sung-Kyu Robin, Delahunty, Claire M, McLellan, Jason S, Burton, Dennis R, Yates, John R, Paulson, James C
Published in Nature protocols (01.06.2018)
Published in Nature protocols (01.06.2018)
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Journal Article
Calcium Signaling through CaMKII Regulates Hepatic Glucose Production in Fasting and Obesity
Ozcan, Lale, Wong, Catherine C.L., Li, Gang, Xu, Tao, Pajvani, Utpal, Park, Sung Kyu Robin, Wronska, Anetta, Chen, Bi-Xing, Marks, Andrew R., Fukamizu, Akiyoshi, Backs, Johannes, Singer, Harold A., Yates, John R., Accili, Domenico, Tabas, Ira
Published in Cell metabolism (02.05.2012)
Published in Cell metabolism (02.05.2012)
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Journal Article
The specification and global reprogramming of histone epigenetic marks during gamete formation and early embryo development in C. elegans
Samson, Mark, Jow, Margaret M, Wong, Catherine C L, Fitzpatrick, Colin, Aslanian, Aaron, Saucedo, Israel, Estrada, Rodrigo, Ito, Takashi, Park, Sung-kyu Robin, Yates, 3rd, John R, Chu, Diana S
Published in PLoS genetics (01.10.2014)
Published in PLoS genetics (01.10.2014)
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Journal Article
PASS-DIA: A Data-Independent Acquisition Approach for Discovery Studies
Mun, Dong-Gi, Renuse, Santosh, Saraswat, Mayank, Madugundu, Anil, Udainiya, Savita, Kim, Hokeun, Park, Sung-Kyu Robin, Zhao, Hui, Nirujogi, Raja Sekhar, Na, Chan Hyun, Kannan, Nagarajan, Yates, John R, Lee, Sang-Won, Pandey, Akhilesh
Published in Analytical chemistry (Washington) (03.11.2020)
Published in Analytical chemistry (Washington) (03.11.2020)
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Journal Article
ComPIL 2.0: An Updated Comprehensive Metaproteomics Database
Park, Sung Kyu Robin, Jung, Titus, Thuy-Boun, Peter S, Wang, Ana Y, Yates, John R, Wolan, Dennis W
Published in Journal of proteome research (01.02.2019)
Published in Journal of proteome research (01.02.2019)
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Integrated Proteomic Pipeline Using Multiple Search Engines for a Proteogenomic Study with a Controlled Protein False Discovery Rate
Park, Gun Wook, Hwang, Heeyoun, Kim, Kwang Hoe, Lee, Ju Yeon, Lee, Hyun Kyoung, Park, Ji Yeong, Ji, Eun Sun, Park, Sung-Kyu Robin, Yates, John R, Kwon, Kyung-Hoon, Park, Young Mok, Lee, Hyoung-Joo, Paik, Young-Ki, Kim, Jin Young, Yoo, Jong Shin
Published in Journal of proteome research (04.11.2016)
Published in Journal of proteome research (04.11.2016)
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Journal Article
Next Generation Proteomic Pipeline for Chromosome-Based Proteomic Research Using NeXtProt and GENCODE Databases
Hwang, Heeyoun, Park, Gun Wook, Park, Ji Yeong, Lee, Hyun Kyoung, Lee, Ju Yeon, Jeong, Ji Eun, Park, Sung-Kyu Robin, Yates, John R, Kwon, Kyung-Hoon, Park, Young Mok, Lee, Hyoung-Joo, Paik, Young-Ki, Kim, Jin Young, Yoo, Jong Shin
Published in Journal of proteome research (01.12.2017)
Published in Journal of proteome research (01.12.2017)
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Journal Article
Toward objective evaluation of proteomic algorithms
Yates, John R, Park, Sung Kyu Robin, Delahunty, Claire M, Xu, Tao, Savas, Jeffrey N, Cociorva, Daniel, Carvalho, Paulo Costa
Published in Nature methods (27.04.2012)
Published in Nature methods (27.04.2012)
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Journal Article
From Raw Data to Biological Discoveries: A Computational Analysis Pipeline for Mass Spectrometry-Based Proteomics
Lavallée-Adam, Mathieu, Park, Sung Kyu Robin, Martínez-Bartolomé, Salvador, He, Lin, Yates, John R.
Published in Journal of the American Society for Mass Spectrometry (01.11.2015)
Published in Journal of the American Society for Mass Spectrometry (01.11.2015)
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Journal Article
Chromosome-Based Proteomic Study for Identifying Novel Protein Variants from Human Hippocampal Tissue Using Customized neXtProt and GENCODE Databases
Hwang, Heeyoun, Park, Gun Wook, Kim, Kwang Hoe, Lee, Ju Yeon, Lee, Hyun Kyoung, Ji, Eun Sun, Park, Sung-Kyu Robin, Xu, Tao, Yates, John R, Kwon, Kyung-Hoon, Park, Young Mok, Lee, Hyoung-Joo, Paik, Young-Ki, Kim, Jin Young, Yoo, Jong Shin
Published in Journal of proteome research (04.12.2015)
Published in Journal of proteome research (04.12.2015)
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Journal Article
A comprehensive and scalable database search system for metaproteomics
Chatterjee, Sandip, Stupp, Gregory S, Park, Sung Kyu Robin, Ducom, Jean-Christophe, Yates, 3rd, John R, Su, Andrew I, Wolan, Dennis W
Published in BMC genomics (16.08.2016)
Published in BMC genomics (16.08.2016)
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Journal Article
Census 2: isobaric labeling data analysis
Park, Sung Kyu Robin, Aslanian, Aaron, McClatchy, Daniel B, Han, Xuemei, Shah, Harshil, Singh, Meha, Rauniyar, Navin, Moresco, James J, Pinto, Antonio F M, Diedrich, Jolene K, Delahunty, Claire, Yates, 3rd, John R
Published in Bioinformatics (Oxford, England) (01.08.2014)
Published in Bioinformatics (Oxford, England) (01.08.2014)
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Journal Article
Interference-Free Proteome Quantification with MS/MS-based Isobaric Isotopologue Detection
Bamberger, Casimir, Pankow, Sandra, Park, Sung Kyu Robin, Yates, John R
Published in Journal of proteome research (07.03.2014)
Published in Journal of proteome research (07.03.2014)
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Journal Article
The Specification and Global Reprogramming of Histone Epigenetic Marks during Gamete Formation and Early Embryo Development in C. elegans: e1004588
Samson, Mark, Jow, Margaret M, Wong, Catherine CL, Fitzpatrick, Colin, Aslanian, Aaron, Saucedo, Israel, Estrada, Rodrigo, Ito, Takashi, Park, Sung-kyu Robin, Yates III, John R, Chu, Diana S
Published in PLoS genetics (01.10.2014)
Published in PLoS genetics (01.10.2014)
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Journal Article
Toward objective evaluation of proteomic algorithms: informatics has driven mass spectrometry-based protein analysis to create large-scale methods for proteomics. As software algorithms have developed, comparisons between algorithms are inevitable. We outline steps for fair and objective comparisons that will make true innovations apparent
Yates, III, John R, Park, Sung Kyu Robin, Delahunty, Claire M, Xu, Tao, Savas, Jeffrey N, Cociorva, Daniel, Carvalho, Paulo Costa
Published in Nature methods (01.05.2012)
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Published in Nature methods (01.05.2012)
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