Genome Scan for Positive Selection in Thoroughbred Horses
Gu, Jingjing, Orr, Nick, Park, Stephen D, Katz, Lisa M, Sulimova, Galina, MacHugh, David E, Hill, Emmeline W
Published in PloS one (02.06.2009)
Published in PloS one (02.06.2009)
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Journal Article
Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle
Park, Stephen D E, Magee, David A, McGettigan, Paul A, Teasdale, Matthew D, Edwards, Ceiridwen J, Lohan, Amanda J, Murphy, Alison, Braud, Martin, Donoghue, Mark T, Liu, Yuan, Chamberlain, Andrew T, Rue-Albrecht, Kévin, Schroeder, Steven, Spillane, Charles, Tai, Shuaishuai, Bradley, Daniel G, Sonstegard, Tad S, Loftus, Brendan J, MacHugh, David E
Published in Genome Biology (26.10.2015)
Published in Genome Biology (26.10.2015)
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The application of transcriptomic data in the authentication of beef derived from contrasting production systems
Sweeney, Torres, Lejeune, Alex, Moloney, Aidan P, Monahan, Frank J, Gettigan, Paul Mc, Downey, Gerard, Park, Stephen D E, Ryan, Marion T
Published in BMC genomics (21.09.2016)
Published in BMC genomics (21.09.2016)
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Journal Article
Global gene expression and systems biology analysis of bovine monocyte-derived macrophages in response to in vitro challenge with Mycobacterium bovis
Magee, David A, Taraktsoglou, Maria, Killick, Kate E, Nalpas, Nicolas C, Browne, John A, Park, Stephen D E, Conlon, Kevin M, Lynn, David J, Hokamp, Karsten, Gordon, Stephen V, Gormley, Eamonn, MacHugh, David E
Published in PloS one (22.02.2012)
Published in PloS one (22.02.2012)
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Journal Article
A complete mitochondrial genome sequence from a mesolithic wild aurochs (Bos primigenius)
Edwards, Ceiridwen J, Magee, David A, Park, Stephen D E, McGettigan, Paul A, Lohan, Amanda J, Murphy, Alison, Finlay, Emma K, Shapiro, Beth, Chamberlain, Andrew T, Richards, Martin B, Bradley, Daniel G, Loftus, Brendan J, MacHugh, David E
Published in PloS one (17.02.2010)
Published in PloS one (17.02.2010)
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Journal Article
Genome-wide transcriptional profiling of peripheral blood leukocytes from cattle infected with Mycobacterium bovis reveals suppression of host immune genes
Killick, Kate E, Browne, John A, Park, Stephen D E, Magee, David A, Martin, Irene, Meade, Kieran G, Gordon, Stephen V, Gormley, Eamonn, O'Farrelly, Cliona, Hokamp, Karsten, MacHugh, David E
Published in BMC genomics (19.12.2011)
Published in BMC genomics (19.12.2011)
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Journal Article
RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis
McLoughlin, Kirsten E, Nalpas, Nicolas C, Rue-Albrecht, Kévin, Browne, John A, Magee, David A, Killick, Kate E, Park, Stephen D E, Hokamp, Karsten, Meade, Kieran G, O'Farrelly, Cliona, Gormley, Eamonn, Gordon, Stephen V, MacHugh, David E
Published in Frontiers in immunology (26.08.2014)
Published in Frontiers in immunology (26.08.2014)
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Journal Article
Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro
Nalpas, Nicolas C, Park, Stephen D E, Magee, David A, Taraktsoglou, Maria, Browne, John A, Conlon, Kevin M, Rue-Albrecht, Kévin, Killick, Kate E, Hokamp, Karsten, Lohan, Amanda J, Loftus, Brendan J, Gormley, Eamonn, Gordon, Stephen V, MacHugh, David E
Published in BMC genomics (08.04.2013)
Published in BMC genomics (08.04.2013)
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Journal Article
Genomic Characterisation of the Indigenous Irish Kerry Cattle Breed
Browett, Sam, McHugo, Gillian, Richardson, Ian W, Magee, David A, Park, Stephen D E, Fahey, Alan G, Kearney, John F, Correia, Carolina N, Randhawa, Imtiaz A S, MacHugh, David E
Published in Frontiers in genetics (19.02.2018)
Published in Frontiers in genetics (19.02.2018)
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Journal Article
Transcriptional profiling of cattle infected with Trypanosoma congolense highlights gene expression signatures underlying trypanotolerance and trypanosusceptibility
O'Gorman, Grace M, Park, Stephen D E, Hill, Emmeline W, Meade, Kieran G, Coussens, Paul M, Agaba, Morris, Naessens, Jan, Kemp, Stephen J, MacHugh, David E
Published in BMC genomics (01.05.2009)
Published in BMC genomics (01.05.2009)
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Journal Article
A Population Genomics Analysis of the Native Irish Galway Sheep Breed
McHugo, Gillian P., Browett, Sam, Randhawa, Imtiaz A. S., Howard, Dawn J., Mullen, Michael P., Richardson, Ian W., Park, Stephen D. E., Magee, David A., Scraggs, Erik, Dover, Michael J., Correia, Carolina N., Hanrahan, James P., MacHugh, David E.
Published in Frontiers in genetics (08.10.2019)
Published in Frontiers in genetics (08.10.2019)
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Journal Article
Bioinformatic discovery of novel bioactive peptides
Kenny, Dermot, Shields, Denis C, Edwards, Richard J, Moran, Niamh, Devocelle, Marc, Kiernan, Aoife, Meade, Gerardene, Signac, William, Foy, Martina, Park, Stephen D E, Dunne, Eimear
Published in Nature chemical biology (01.02.2007)
Published in Nature chemical biology (01.02.2007)
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Journal Article
Polymorphism discovery and allele frequency estimation using high-throughput DNA sequencing of target-enriched pooled DNA samples
Mullen, Michael P, Creevey, Christopher J, Berry, Donagh P, McCabe, Matt S, Magee, David A, Howard, Dawn J, Killeen, Aideen P, Park, Stephen D, McGettigan, Paul A, Lucy, Matt C, Machugh, David E, Waters, Sinead M
Published in BMC genomics (11.01.2012)
Published in BMC genomics (11.01.2012)
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Journal Article
Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis
Killick, Kate E, Magee, David A, Park, Stephen D E, Taraktsoglou, Maria, Browne, John A, Conlon, Kevin M, Nalpas, Nicolas C, Gormley, Eamonn, Gordon, Stephen V, MacHugh, David E, Hokamp, Karsten
Published in Frontiers in immunology (01.10.2014)
Published in Frontiers in immunology (01.10.2014)
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Journal Article
Domestication of cattle: Two or three events?
Pitt, Daniel, Sevane, Natalia, Nicolazzi, Ezequiel L., MacHugh, David E., Park, Stephen D. E., Colli, Licia, Martinez, Rodrigo, Bruford, Michael W., Orozco‐terWengel, Pablo
Published in Evolutionary applications (01.01.2019)
Published in Evolutionary applications (01.01.2019)
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Journal Article
Antigen stimulation of peripheral blood mononuclear cells from Mycobacterium bovis infected cattle yields evidence for a novel gene expression program
Meade, Kieran G, Gormley, Eamonn, O'Farrelly, Cliona, Park, Stephen D, Costello, Eamon, Keane, Joseph, Zhao, Yingdong, MacHugh, David E
Published in BMC genomics (29.09.2008)
Published in BMC genomics (29.09.2008)
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Journal Article
Cytokine mRNA profiling of peripheral blood mononuclear cells from trypanotolerant and trypanosusceptible cattle infected with Trypanosoma congolense
O'Gorman, Grace M, Park, Stephen D. E, Hill, Emmeline W, Meade, Kieran G, Mitchell, Laura C, Agaba, Morris, Gibson, John P, Hanotte, Olivier, Naessens, Jan, Kemp, Stephen J, MacHugh, David E
Published in Physiological genomics (13.12.2006)
Published in Physiological genomics (13.12.2006)
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Journal Article
Transcriptional adaptations following exercise in thoroughbred horse skeletal muscle highlights molecular mechanisms that lead to muscle hypertrophy
McGivney, Beatrice A, Eivers, Suzanne S, MacHugh, David E, MacLeod, James N, O'Gorman, Grace M, Park, Stephen D E, Katz, Lisa M, Hill, Emmeline W
Published in BMC genomics (30.12.2009)
Published in BMC genomics (30.12.2009)
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Journal Article
Transmission ratio distortion at the growth hormone gene (GH1) in bovine preimplantation embryos: An in vitro culture-induced phenomenon?
Murphy, Angela M., Meade, Kieran G., Hayes, Patricia A., Park, Stephen D.E., Evans, Alex C.O., Lonergan, Patrick, MacHugh, David E.
Published in Molecular reproduction and development (01.05.2008)
Published in Molecular reproduction and development (01.05.2008)
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Journal Article
Genome-Wide microRNA Binding Site Variation between Extinct Wild Aurochs and Modern Cattle Identifies Candidate microRNA-Regulated Domestication Genes
Braud, Martin, Magee, David A, Park, Stephen D E, Sonstegard, Tad S, Waters, Sinead M, MacHugh, David E, Spillane, Charles
Published in Frontiers in genetics (31.01.2017)
Published in Frontiers in genetics (31.01.2017)
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