Benchmarking Metagenomics Tools for Taxonomic Classification
Ye, Simon H., Siddle, Katherine J., Park, Daniel J., Sabeti, Pardis C.
Published in Cell (08.08.2019)
Published in Cell (08.08.2019)
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Journal Article
Natural selection and infectious disease in human populations
Karlsson, Elinor K., Kwiatkowski, Dominic P., Sabeti, Pardis C.
Published in Nature reviews. Genetics (01.06.2014)
Published in Nature reviews. Genetics (01.06.2014)
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Journal Article
Detecting natural selection in genomic data
Vitti, Joseph J, Grossman, Sharon R, Sabeti, Pardis C
Published in Annual review of genetics (01.01.2013)
Published in Annual review of genetics (01.01.2013)
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Journal Article
Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant
Yurkovetskiy, Leonid, Wang, Xue, Pascal, Kristen E., Tomkins-Tinch, Christopher, Nyalile, Thomas P., Wang, Yetao, Baum, Alina, Diehl, William E., Dauphin, Ann, Carbone, Claudia, Veinotte, Kristen, Egri, Shawn B., Schaffner, Stephen F., Lemieux, Jacob E., Munro, James B., Rafique, Ashique, Barve, Abhi, Sabeti, Pardis C., Kyratsous, Christos A., Dudkina, Natalya V., Shen, Kuang, Luban, Jeremy
Published in Cell (29.10.2020)
Published in Cell (29.10.2020)
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Neuropathological Features of Covid-19
Solomon, Isaac H, Normandin, Erica, Bhattacharyya, Shamik, Mukerji, Shibani S, Keller, Kiana, Ali, Ahya S, Adams, Gordon, Hornick, Jason L, Padera, Robert F, Sabeti, Pardis
Published in New England Journal of Medicine (03.09.2020)
Published in New England Journal of Medicine (03.09.2020)
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Directed evolution of a family of AAV capsid variants enabling potent muscle-directed gene delivery across species
Tabebordbar, Mohammadsharif, Lagerborg, Kim A., Stanton, Alexandra, King, Emily M., Ye, Simon, Tellez, Liana, Krunnfusz, Allison, Tavakoli, Sahar, Widrick, Jeffrey J., Messemer, Kathleen A., Troiano, Emily C., Moghadaszadeh, Behzad, Peacker, Bryan L., Leacock, Krystynne A., Horwitz, Naftali, Beggs, Alan H., Wagers, Amy J., Sabeti, Pardis C.
Published in Cell (16.09.2021)
Published in Cell (16.09.2021)
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Journal Article
Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq
Kotliar, Dylan, Veres, Adrian, Nagy, M Aurel, Tabrizi, Shervin, Hodis, Eran, Melton, Douglas A, Sabeti, Pardis C
Published in eLife (08.07.2019)
Published in eLife (08.07.2019)
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Journal Article
Programmable Inhibition and Detection of RNA Viruses Using Cas13
Freije, Catherine A., Myhrvold, Cameron, Boehm, Chloe K., Lin, Aaron E., Welch, Nicole L., Carter, Amber, Metsky, Hayden C., Luo, Cynthia Y., Abudayyeh, Omar O., Gootenberg, Jonathan S., Yozwiak, Nathan L., Zhang, Feng, Sabeti, Pardis C.
Published in Molecular cell (05.12.2019)
Published in Molecular cell (05.12.2019)
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Journal Article
Detecting Novel Associations in Large Data Sets
Reshef, David N., Reshef, Yakir A., Finucane, Hilary K., Grossman, Sharon R., McVean, Gilean, Turnbaugh, Peter J., Lander, Eric S., Mitzenmacher, Michael, Sabeti, Pardis C.
Published in Science (American Association for the Advancement of Science) (16.12.2011)
Published in Science (American Association for the Advancement of Science) (16.12.2011)
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Journal Article
Nucleic acid detection with CRISPR-Cas13a/C2c2
Gootenberg, Jonathan S., Abudayyeh, Omar O., Lee, Jeong Wook, Essletzbichler, Patrick, Dy, Aaron J., Joung, Julia, Verdine, Vanessa, Donghia, Nina, Daringer, Nichole M., Freije, Catherine A., Myhrvold, Cameron, Bhattacharyya, Roby P., Livny, Jonathan, Regev, Aviv, Koonin, Eugene V., Hung, Deborah T., Sabeti, Pardis C., Collins, James J., Zhang, Feng
Published in Science (American Association for the Advancement of Science) (28.04.2017)
Published in Science (American Association for the Advancement of Science) (28.04.2017)
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Journal Article
Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay
Tewhey, Ryan, Kotliar, Dylan, Park, Daniel S., Liu, Brandon, Winnicki, Sarah, Reilly, Steven K., Andersen, Kristian G., Mikkelsen, Tarjei S., Lander, Eric S., Schaffner, Stephen F., Sabeti, Pardis C.
Published in Cell (02.06.2016)
Published in Cell (02.06.2016)
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Journal Article
Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness
Obermeyer, Fritz, Jankowiak, Martin, Barkas, Nikolaos, Schaffner, Stephen F, Pyle, Jesse D, Yurkovetskiy, Leonid, Bosso, Matteo, Park, Daniel J, Babadi, Mehrtash, MacInnis, Bronwyn L, Luban, Jeremy, Sabeti, Pardis C, Lemieux, Jacob E
Published in Science (American Association for the Advancement of Science) (17.06.2022)
Published in Science (American Association for the Advancement of Science) (17.06.2022)
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Journal Article
Massively multiplexed nucleic acid detection with Cas13
Ackerman, Cheri M., Myhrvold, Cameron, Thakku, Sri Gowtham, Freije, Catherine A., Metsky, Hayden C., Yang, David K., Ye, Simon H., Boehm, Chloe K., Kosoko-Thoroddsen, Tinna-Sólveig F., Kehe, Jared, Nguyen, Tien G., Carter, Amber, Kulesa, Anthony, Barnes, John R., Dugan, Vivien G., Hung, Deborah T., Blainey, Paul C., Sabeti, Pardis C.
Published in Nature (London) (01.06.2020)
Published in Nature (London) (01.06.2020)
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Journal Article
Testing in a Pandemic — Improving Access, Coordination, and Prioritization
Botti-Lodovico, Yolanda, Rosenberg, Eric, Sabeti, Pardis C
Published in The New England journal of medicine (21.01.2021)
Published in The New England journal of medicine (21.01.2021)
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Journal Article
Data sharing: Make outbreak research open access
Yozwiak, Nathan L., Schaffner, Stephen F., Sabeti, Pardis C.
Published in Nature (London) (26.02.2015)
Published in Nature (London) (26.02.2015)
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Journal Article
Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA
Broadbent, Kate M, Broadbent, Jill C, Ribacke, Ulf, Wirth, Dyann, Rinn, John L, Sabeti, Pardis C
Published in BMC genomics (13.06.2015)
Published in BMC genomics (13.06.2015)
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Journal Article
Clinical and laboratory predictors of Lassa fever outcome in a dedicated treatment facility in Nigeria: a retrospective, observational cohort study
Okokhere, Peter, Colubri, Andres, Azubike, Chukwuemeka, Iruolagbe, Christopher, Osazuwa, Omoregie, Tabrizi, Shervin, Chin, Elizabeth, Asad, Sara, Ediale, Ehi, Rafiu, Mojeed, Adomeh, Donatus, Odia, Ikponmwosa, Atafo, Rebecca, Aire, Chris, Okogbenin, Sylvanus, Pahlman, Meike, Becker-Ziaja, Beate, Asogun, Danny, Fradet, Terrence, Fry, Ben, Schaffner, Stephen F, Happi, Christian, Akpede, George, Günther, Stephan, Sabeti, Pardis C
Published in The Lancet infectious diseases (01.06.2018)
Published in The Lancet infectious diseases (01.06.2018)
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Journal Article
Whole genome sequencing of human Borrelia burgdorferi isolates reveals linked blocks of accessory genome elements located on plasmids and associated with human dissemination
Lemieux, Jacob E, Huang, Weihua, Hill, Nathan, Cerar, Tjasa, Freimark, Lisa, Hernandez, Sergio, Luban, Matteo, Maraspin, Vera, Bogovič, Petra, Ogrinc, Katarina, Ruzič-Sabljič, Eva, Lapierre, Pascal, Lasek-Nesselquist, Erica, Singh, Navjot, Iyer, Radha, Liveris, Dionysios, Reed, Kurt D, Leong, John M, Branda, John A, Steere, Allen C, Wormser, Gary P, Strle, Franc, Sabeti, Pardis C, Schwartz, Ira, Strle, Klemen
Published in PLoS pathogens (01.08.2023)
Published in PLoS pathogens (01.08.2023)
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