Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage
Jeong, Dong-Hoon, Park, Sunhee, Zhai, Jixian, Gurazada, Sai Guna Ranjan, De Paoli, Emanuele, Meyers, Blake C., Green, Pamela J.
Published in The Plant cell (01.12.2011)
Published in The Plant cell (01.12.2011)
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MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
Zhai, Jixian, Jeong, Dong-Hoon, De Paoli, Emanuele, Park, Sunhee, Rosen, Benjamin D, Li, Yupeng, González, Alvaro J, Yan, Zhe, Kitto, Sherry L, Grusak, Michael A, Jackson, Scott A, Stacey, Gary, Cook, Douglas R, Green, Pamela J, Sherrier, D Janine, Meyers, Blake C
Published in Genes & development (01.12.2011)
Published in Genes & development (01.12.2011)
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Journal Article
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
German, Marcelo A, Pillay, Manoj, Jeong, Dong-Hoon, Hetawal, Amit, Luo, Shujun, Janardhanan, Prakash, Kannan, Vimal, Rymarquis, Linda A, Nobuta, Kan, German, Rana, de Paoli, Emanuele, Lu, Cheng, Schroth, Gary, Meyers, Blake C, Green, Pamela J
Published in Nature biotechnology (01.08.2008)
Published in Nature biotechnology (01.08.2008)
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Journal Article
Agroinoculation of Grapevine Pinot Gris Virus in tobacco and grapevine provides insights on viral pathogenesis
Tarquini, Giulia, Zaina, Giusi, Ermacora, Paolo, De Amicis, Francesca, Franco-Orozco, Barbara, Loi, Nazia, Martini, Marta, Bianchi, Gian Luca, Pagliari, Laura, Firrao, Giuseppe, de Paoli, Emanuele, Musetti, Rita
Published in PloS one (19.03.2019)
Published in PloS one (19.03.2019)
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Boosting grapevine breeding for climate-smart viticulture: from genetic resources to predictive genomics
Magon, Gabriele, De Rosa, Valeria, Martina, Matteo, Falchi, Rachele, Acquadro, Alberto, Barcaccia, Gianni, Portis, Ezio, Vannozzi, Alessandro, De Paoli, Emanuele
Published in Frontiers in plant science (11.12.2023)
Published in Frontiers in plant science (11.12.2023)
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Revitalizing agriculture: next-generation genotyping and -omics technologies enabling molecular prediction of resilient traits in the Solanaceae family
Martina, Matteo, De Rosa, Valeria, Magon, Gabriele, Acquadro, Alberto, Barchi, Lorenzo, Barcaccia, Gianni, De Paoli, Emanuele, Vannozzi, Alessandro, Portis, Ezio
Published in Frontiers in plant science (05.02.2024)
Published in Frontiers in plant science (05.02.2024)
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Journal Article
Multilocus Patterns of Nucleotide Diversity, Linkage Disequilibrium and Demographic History of Norway Spruce [Picea abies (L.) Karst]
Heuertz, Myriam, De Paoli, Emanuele, Kallman, Thomas, Larsson, Hanna, Jurman, Irena, Morgante, Michele, Lascoux, Martin, Gyllenstrand, Niclas
Published in Genetics (Austin) (01.12.2006)
Published in Genetics (Austin) (01.12.2006)
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Journal Article
Distinct Size Distribution of Endogenous siRNAs in Maize: Evidence from Deep Sequencing in the mop1-1 Mutant
Nobuta, Kan, Lu, Cheng, Shrivastava, Roli, Pillay, Manoj, De Paoli, Emanuele, Accerbi, Monica, Arteaga-Vazquez, Mario, Sidorenko, Lyudmila, Jeong, Dong-Hoon, Yen, Yang, Green, Pamela J., Chandler, Vicki L., Meyers, Blake C.
Published in Proceedings of the National Academy of Sciences - PNAS (30.09.2008)
Published in Proceedings of the National Academy of Sciences - PNAS (30.09.2008)
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Journal Article
Genomic and small RNA sequencing of Miscanthus giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses
Swaminathan, Kankshita, Alabady, Magdy S, Varala, Kranthi, De Paoli, Emanuele, Ho, Isaac, Rokhsar, Dan S, Arumuganathan, Aru K, Ming, Ray, Green, Pamela J, Meyers, Blake C, Moose, Stephen P, Hudson, Matthew E
Published in GenomeBiology.com (03.02.2010)
Published in GenomeBiology.com (03.02.2010)
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Journal Article
Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs
Chávez Montes, Ricardo A., Rosas-Cárdenas, de Fátima Flor, De Paoli, Emanuele, Accerbi, Monica, Rymarquis, Linda A., Mahalingam, Gayathri, Marsch-Martínez, Nayelli, Meyers, Blake C., Green, Pamela J., de Folter, Stefan
Published in Nature communications (23.04.2014)
Published in Nature communications (23.04.2014)
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Journal Article
Hypomethylated Partial Restriction (HMPR) method reduces the repetitive content of genomic libraries in Norway spruce (Picea abies)
Larsson, Hanna, De Paoli, Emanuele, Morgante, Michele, Lascoux, Martin, Gyllenstrand, Niclas
Published in Tree genetics & genomes (01.04.2013)
Published in Tree genetics & genomes (01.04.2013)
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Journal Article
Stress responses and epigenomic instability mark the loss of somatic embryogenesis competence in grapevine
Dal Santo, Silvia, De Paoli, Emanuele, Pagliarani, Chiara, Amato, Alessandra, Celii, Mirko, Boccacci, Paolo, Zenoni, Sara, Gambino, Giorgio, Perrone, Irene
Published in Plant physiology (Bethesda) (20.01.2022)
Published in Plant physiology (Bethesda) (20.01.2022)
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Journal Article
Haemolymph removal by Varroa mite destabilizes the dynamical interaction between immune effectors and virus in bees, as predicted by Volterra's model
Annoscia, Desiderato, Brown, Sam P, Di Prisco, Gennaro, De Paoli, Emanuele, Del Fabbro, Simone, Frizzera, Davide, Zanni, Virginia, Galbraith, David A, Caprio, Emilio, Grozinger, Christina M, Pennacchio, Francesco, Nazzi, Francesco
Published in Proceedings of the Royal Society. B, Biological sciences (24.04.2019)
Published in Proceedings of the Royal Society. B, Biological sciences (24.04.2019)
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Journal Article
Open chromatin in grapevine marks candidate CREs and with other chromatin features correlates with gene expression
Schwope, Rachel, Magris, Gabriele, Miculan, Mara, Paparelli, Eleonora, Celii, Mirko, Tocci, Aldo, Marroni, Fabio, Fornasiero, Alice, De Paoli, Emanuele, Morgante, Michele
Published in The Plant journal : for cell and molecular biology (01.09.2021)
Published in The Plant journal : for cell and molecular biology (01.09.2021)
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Journal Article
The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea
Olsen, Jeanine L., Rouzé, Pierre, Verhelst, Bram, Lin, Yao-Cheng, Bayer, Till, Collen, Jonas, Dattolo, Emanuela, De Paoli, Emanuele, Dittami, Simon, Maumus, Florian, Michel, Gurvan, Kersting, Anna, Lauritano, Chiara, Lohaus, Rolf, Töpel, Mats, Tonon, Thierry, Vanneste, Kevin, Amirebrahimi, Mojgan, Brakel, Janina, Boström, Christoffer, Chovatia, Mansi, Grimwood, Jane, Jenkins, Jerry W., Jueterbock, Alexander, Mraz, Amy, Stam, Wytze T., Tice, Hope, Bornberg-Bauer, Erich, Green, Pamela J., Pearson, Gareth A., Procaccini, Gabriele, Duarte, Carlos M., Schmutz, Jeremy, Reusch, Thorsten B. H., Van de Peer, Yves
Published in Nature (London) (18.02.2016)
Published in Nature (London) (18.02.2016)
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Journal Article
Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs
Chávez Montes, Ricardo A., Rosas-Cárdenas, de Fátima Flor, De Paoli, Emanuele, Accerbi, Monica, Rymarquis, Linda A., Mahalingam, Gayathri, Marsch-Martínez, Nayelli, Meyers, Blake C., Green, Pamela J., de Folter, Stefan
Published in Nature communications (23.04.2014)
Published in Nature communications (23.04.2014)
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Journal Article
Genetic, epigenetic and genomic effects on variation of gene expression among grape varieties
Magris, Gabriele, Di Gaspero, Gabriele, Marroni, Fabio, Zenoni, Sara, Tornielli, Giovanni Battista, Celii, Mirko, De Paoli, Emanuele, Pezzotti, Mario, Conte, Federica, Paci, Paola, Morgante, Michele
Published in The Plant journal : for cell and molecular biology (01.09.2019)
Published in The Plant journal : for cell and molecular biology (01.09.2019)
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