rboAnalyzer webserver: web service for non-coding RNA characterization from NCBI BLAST output
Schwarz, Marek, Vohradský, Jiří, Pánek, Josef
Published in Bioinformatics (Oxford, England) (09.09.2021)
Published in Bioinformatics (Oxford, England) (09.09.2021)
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Journal Article
The SMN complex drives structural changes in human snRNAs to enable snRNP assembly
Pánek, Josef, Roithová, Adriana, Radivojević, Nenad, Sýkora, Michal, Prusty, Archana Bairavasundaram, Huston, Nicholas, Wan, Han, Pyle, Anna Marie, Fischer, Utz, Staněk, David
Published in Nature communications (18.10.2023)
Published in Nature communications (18.10.2023)
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Journal Article
The Sm-core mediates the retention of partially-assembled spliceosomal snRNPs in Cajal bodies until their full maturation
Roithová, Adriana, Klimešová, Klára, Pánek, Josef, Will, Cindy L, Lührmann, Reinhard, Staněk, David, Girard, Cyrille
Published in Nucleic acids research (20.04.2018)
Published in Nucleic acids research (20.04.2018)
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Journal Article
Does eIF3 promote reinitiation after translation of short upstream ORFs also in mammalian cells?
Hronová, Vladislava, Mohammad, Mahabub Pasha, Wagner, Susan, Pánek, Josef, Gunišová, Stanislava, Zeman, Jakub, Poncová, Kristýna, Valášek, Leoš Shivaya
Published in RNA biology (02.12.2017)
Published in RNA biology (02.12.2017)
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Journal Article
rboAnalyzer: A Software to Improve Characterization of Non-coding RNAs From Sequence Database Search Output
Schwarz, Marek, Vohradský, Jiří, Modrák, Martin, Pánek, Josef
Published in Frontiers in genetics (28.07.2020)
Published in Frontiers in genetics (28.07.2020)
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Journal Article
Ms1 RNA Interacts With the RNA Polymerase Core in Streptomyces coelicolor and Was Identified in Majority of Actinobacteria Using a Linguistic Gene Synteny Search
Vaňková Hausnerová, Viola, Marvalová, Olga, Šiková, Michaela, Shoman, Mahmoud, Havelková, Jarmila, Kambová, Milada, Janoušková, Martina, Kumar, Dilip, Halada, Petr, Schwarz, Marek, Krásný, Libor, Hnilicová, Jarmila, Pánek, Josef
Published in Frontiers in microbiology (11.05.2022)
Published in Frontiers in microbiology (11.05.2022)
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Journal Article
Translation reinitiation relies on the interaction between eIF3a/TIF32 and progressively folded cis-acting mRNA elements preceding short uORFs
Munzarová, Vanda, Pánek, Josef, Gunišová, Stanislava, Dányi, István, Szamecz, Béla, Valášek, Leoš Shivaya
Published in PLoS genetics (01.07.2011)
Published in PLoS genetics (01.07.2011)
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Journal Article
A systematic computational analysis of the rRNA-3' UTR sequence complementarity suggests a regulatory mechanism influencing post-termination events in metazoan translation
Panek, Josef, Kolar, Michal, Herrmannova, Anna, Valasek, Leos Shivaya
Published in RNA (Cambridge) (01.07.2016)
Published in RNA (Cambridge) (01.07.2016)
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Journal Article
Ms1, a novel sRNA interacting with the RNA polymerase core in mycobacteria
Hnilicová, Jarmila, Jirát Matějčková, Jitka, Šiková, Michaela, Pospíšil, Jiří, Halada, Petr, Pánek, Josef, Krásný, Libor
Published in Nucleic acids research (13.10.2014)
Published in Nucleic acids research (13.10.2014)
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Journal Article
rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots
Jelínek, Jan, Hoksza, David, Hajič, Jan, Pešek, Jan, Drozen, Jan, Hladík, Tomáš, Klimpera, Michal, Vohradský, Jiří, Pánek, Josef
Published in Database : the journal of biological databases and curation (2019)
Published in Database : the journal of biological databases and curation (2019)
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Journal Article
Biocomputational prediction of small non-coding RNAs in Streptomyces
Pánek, Josef, Bobek, Jan, Mikulík, Karel, Basler, Marek, Vohradský, Jirí
Published in BMC genomics (13.05.2008)
Published in BMC genomics (13.05.2008)
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Journal Article
Template-based prediction of ribosomal RNA secondary structure
Panek, Josef, Hajic, Jan, Hoksza, David
Published in 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.11.2014)
Published in 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.11.2014)
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Conference Proceeding
Template-based prediction of RNA tertiary structure
Galvanek, Rastislav, Hoksza, David, Panek, Josef
Published in 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.12.2016)
Published in 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (01.12.2016)
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Conference Proceeding