Identification of significant chromatin contacts from HiChIP data by FitHiChIP
Bhattacharyya, Sourya, Chandra, Vivek, Vijayanand, Pandurangan, Ay, Ferhat
Published in Nature communications (17.09.2019)
Published in Nature communications (17.09.2019)
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Imbalance of Regulatory and Cytotoxic SARS-CoV-2-Reactive CD4+ T Cells in COVID-19
Meckiff, Benjamin J., Ramírez-Suástegui, Ciro, Fajardo, Vicente, Chee, Serena J., Kusnadi, Anthony, Simon, Hayley, Eschweiler, Simon, Grifoni, Alba, Pelosi, Emanuela, Weiskopf, Daniela, Sette, Alessandro, Ay, Ferhat, Seumois, Grégory, Ottensmeier, Christian H., Vijayanand, Pandurangan
Published in Cell (25.11.2020)
Published in Cell (25.11.2020)
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Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression
Schmiedel, Benjamin J., Singh, Divya, Madrigal, Ariel, Valdovino-Gonzalez, Alan G., White, Brandie M., Zapardiel-Gonzalo, Jose, Ha, Brendan, Altay, Gokmen, Greenbaum, Jason A., McVicker, Graham, Seumois, Grégory, Rao, Anjana, Kronenberg, Mitchell, Peters, Bjoern, Vijayanand, Pandurangan
Published in Cell (29.11.2018)
Published in Cell (29.11.2018)
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COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell types
Schmiedel, Benjamin J., Rocha, Job, Gonzalez-Colin, Cristian, Bhattacharyya, Sourya, Madrigal, Ariel, Ottensmeier, Christian H., Ay, Ferhat, Chandra, Vivek, Vijayanand, Pandurangan
Published in Nature communications (19.11.2021)
Published in Nature communications (19.11.2021)
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Control of Foxp3 stability through modulation of TET activity
Yue, Xiaojing, Trifari, Sara, Äijö, Tarmo, Tsagaratou, Ageliki, Pastor, William A, Zepeda-Martínez, Jorge A, Lio, Chan-Wang J, Li, Xiang, Huang, Yun, Vijayanand, Pandurangan, Lähdesmäki, Harri, Rao, Anjana
Published in The Journal of experimental medicine (07.03.2016)
Published in The Journal of experimental medicine (07.03.2016)
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Intratumoral follicular regulatory T cells curtail anti-PD-1 treatment efficacy
Eschweiler, Simon, Clarke, James, Ramírez-Suástegui, Ciro, Panwar, Bharat, Madrigal, Ariel, Chee, Serena J., Karydis, Ioannis, Woo, Edwin, Alzetani, Aiman, Elsheikh, Somaia, Hanley, C. J., Thomas, G. J., Friedmann, Peter S., Sanchez-Elsner, Tilman, Ay, Ferhat, Ottensmeier, Christian H., Vijayanand, Pandurangan
Published in Nature immunology (01.08.2021)
Published in Nature immunology (01.08.2021)
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Promoter-interacting expression quantitative trait loci are enriched for functional genetic variants
Chandra, Vivek, Bhattacharyya, Sourya, Schmiedel, Benjamin J., Madrigal, Ariel, Gonzalez-Colin, Cristian, Fotsing, Stephanie, Crinklaw, Austin, Seumois, Gregory, Mohammadi, Pejman, Kronenberg, Mitchell, Peters, Bjoern, Ay, Ferhat, Vijayanand, Pandurangan
Published in Nature genetics (01.01.2021)
Published in Nature genetics (01.01.2021)
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Unique phenotypes and clonal expansions of human CD4 effector memory T cells re-expressing CD45RA
Tian, Yuan, Babor, Mariana, Lane, Jerome, Schulten, Veronique, Patil, Veena S., Seumois, Grégory, Rosales, Sandy L., Fu, Zheng, Picarda, Gaelle, Burel, Julie, Zapardiel-Gonzalo, Jose, Tennekoon, Rashika N., De Silva, Aruna D., Premawansa, Sunil, Premawansa, Gayani, Wijewickrama, Ananda, Greenbaum, Jason A., Vijayanand, Pandurangan, Weiskopf, Daniela, Sette, Alessandro, Peters, Bjoern
Published in Nature communications (13.11.2017)
Published in Nature communications (13.11.2017)
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An Integrated Workflow To Assess Technical and Biological Variability of Cell Population Frequencies in Human Peripheral Blood by Flow Cytometry
Burel, Julie G, Qian, Yu, Lindestam Arlehamn, Cecilia, Weiskopf, Daniela, Zapardiel-Gonzalo, Jose, Taplitz, Randy, Gilman, Robert H, Saito, Mayuko, de Silva, Aruna D, Vijayanand, Pandurangan, Scheuermann, Richard H, Sette, Alessandro, Peters, Bjoern
Published in The Journal of immunology (1950) (15.02.2017)
Published in The Journal of immunology (1950) (15.02.2017)
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Transcriptome and chromatin landscape of iNKT cells are shaped by subset differentiation and antigen exposure
Murray, Mallory Paynich, Engel, Isaac, Seumois, Grégory, Herrera-De la Mata, Sara, Rosales, Sandy Lucette, Sethi, Ashu, Logandha Ramamoorthy Premlal, Ashmitaa, Seo, Goo-Young, Greenbaum, Jason, Vijayanand, Pandurangan, Scott-Browne, James P., Kronenberg, Mitchell
Published in Nature communications (04.03.2021)
Published in Nature communications (04.03.2021)
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Allergen-specific immunotherapy modulates the balance of circulating Tfh and Tfr cells
Schulten, Veronique, PhD, Tripple, Victoria, BSc, Seumois, Grégory, PhD, Qian, Yu, PhD, Scheuermann, Richard H., PhD, Fu, Zheng, PhD, Locci, Michela, PhD, Rosales, Sandy, BSc, Vijayanand, Pandurangan, MD, Sette, Alessandro, PhD, Alam, Rafeul, MD, Crotty, Shane, PhD, Peters, Bjoern, PhD
Published in Journal of allergy and clinical immunology (01.02.2018)
Published in Journal of allergy and clinical immunology (01.02.2018)
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Targeting the Myofibroblastic Cancer-Associated Fibroblast Phenotype Through Inhibition of NOX4
Hanley, Christopher J, Mellone, Massimiliano, Ford, Kirsty, Thirdborough, Steve M, Mellows, Toby, Frampton, Steven J, Smith, David M, Harden, Elena, Szyndralewiez, Cedric, Bullock, Marc, Noble, Fergus, Moutasim, Karwan A, King, Emma V, Vijayanand, Pandurangan, Mirnezami, Alex H, Underwood, Timothy J, Ottensmeier, Christian H, Thomas, Gareth J
Published in JNCI : Journal of the National Cancer Institute (01.01.2018)
Published in JNCI : Journal of the National Cancer Institute (01.01.2018)
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17q21 asthma-risk variants switch CTCF binding and regulate IL-2 production by T cells
Schmiedel, Benjamin Joachim, Seumois, Grégory, Samaniego-Castruita, Daniela, Cayford, Justin, Schulten, Veronique, Chavez, Lukas, Ay, Ferhat, Sette, Alessandro, Peters, Bjoern, Vijayanand, Pandurangan
Published in Nature communications (16.11.2016)
Published in Nature communications (16.11.2016)
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Multi-cell type gene coexpression network analysis reveals coordinated interferon response and cross-cell type correlations in systemic lupus erythematosus
Panwar, Bharat, Schmiedel, Benjamin J, Liang, Shu, White, Brandie, Rodriguez, Enrique, Kalunian, Kenneth, McKnight, Andrew J, Soloff, Rachel, Seumois, Gregory, Vijayanand, Pandurangan, Ay, Ferhat
Published in Genome research (01.04.2021)
Published in Genome research (01.04.2021)
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Publisher Correction: Innate-like functions of natural killer T cell subsets result from highly divergent gene programs
Engel, Isaac, Seumois, Grégory, Chavez, Lukas, Samaniego-Castruita, Daniela, White, Brandie, Chawla, Ashu, Mock, Dennis, Vijayanand, Pandurangan, Kronenberg, Mitchell
Published in Nature immunology (01.12.2019)
Published in Nature immunology (01.12.2019)
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Allergen-specific IgG+ memory B cells are temporally linked to IgE memory responses
Hoof, Ilka, Schulten, Veronique, Layhadi, Janice A., Stranzl, Thomas, Christensen, Lars H., Herrera de la Mata, Sara, Seumois, Grégory, Vijayanand, Pandurangan, Lundegaard, Claus, Niss, Kristoffer, Lund, Anders, Ahrenfeldt, Johanne, Holm, Jens, Steveling, Esther, Sharif, Hanisah, Durham, Stephen R., Peters, Björn, Shamji, Mohamed H., Andersen, Peter S.
Published in Journal of allergy and clinical immunology (01.07.2020)
Published in Journal of allergy and clinical immunology (01.07.2020)
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The Challenge of Distinguishing Cell–Cell Complexes from Singlet Cells in Non‐Imaging Flow Cytometry and Single‐Cell Sorting
Burel, Julie G., Pomaznoy, Mikhail, Lindestam Arlehamn, Cecilia S., Seumois, Gregory, Vijayanand, Pandurangan, Sette, Alessandro, Peters, Bjoern
Published in Cytometry. Part A (01.11.2020)
Published in Cytometry. Part A (01.11.2020)
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Transcriptomic Analysis of CD4 + T Cells Reveals Novel Immune Signatures of Latent Tuberculosis
Burel, Julie G, Lindestam Arlehamn, Cecilia S, Khan, Nabeela, Seumois, Grégory, Greenbaum, Jason A, Taplitz, Randy, Gilman, Robert H, Saito, Mayuko, Vijayanand, Pandurangan, Sette, Alessandro, Peters, Bjoern
Published in The Journal of immunology (1950) (01.05.2018)
Published in The Journal of immunology (1950) (01.05.2018)
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Late-rising CD4 T cells resolve mouse cytomegalovirus persistent replication in the salivary gland
Brunel, Simon, Picarda, Gaelle, Gupta, Ankan, Ghosh, Raima, McDonald, Bryan, El Morabiti, Rachid, Jiang, Wenjin, Greenbaum, Jason A, Adler, Barbara, Seumois, Gregory, Croft, Michael, Vijayanand, Pandurangan, Benedict, Chris A
Published in PLoS pathogens (18.01.2024)
Published in PLoS pathogens (18.01.2024)
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