High-throughput and Sensitive Immunopeptidomics Platform Reveals Profound Interferonγ-Mediated Remodeling of the Human Leukocyte Antigen (HLA) Ligandome
Chong, Chloe, Marino, Fabio, Pak, HuiSong, Racle, Julien, Daniel, Roy T., Müller, Markus, Gfeller, David, Coukos, George, Bassani-Sternberg, Michal
Published in Molecular & cellular proteomics (01.03.2018)
Published in Molecular & cellular proteomics (01.03.2018)
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Journal Article
Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity
Bassani-Sternberg, Michal, Chong, Chloé, Guillaume, Philippe, Solleder, Marthe, Pak, HuiSong, Gannon, Philippe O, Kandalaft, Lana E, Coukos, George, Gfeller, David
Published in PLoS computational biology (01.08.2017)
Published in PLoS computational biology (01.08.2017)
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Journal Article
Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes
Chong, Chloe, Müller, Markus, Pak, HuiSong, Harnett, Dermot, Huber, Florian, Grun, Delphine, Leleu, Marion, Auger, Aymeric, Arnaud, Marion, Stevenson, Brian J, Michaux, Justine, Bilic, Ilija, Hirsekorn, Antje, Calviello, Lorenzo, Simó-Riudalbas, Laia, Planet, Evarist, Lubiński, Jan, Bryśkiewicz, Marta, Wiznerowicz, Maciej, Xenarios, Ioannis, Zhang, Lin, Trono, Didier, Harari, Alexandre, Ohler, Uwe, Coukos, George, Bassani-Sternberg, Michal
Published in Nature communications (10.03.2020)
Published in Nature communications (10.03.2020)
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Journal Article
Reversion analysis reveals the in vivo immunogenicity of a poorly MHC I-binding cancer neoepitope
Ebrahimi-Nik, Hakimeh, Moussa, Marmar, Englander, Ryan P, Singhaviranon, Summit, Michaux, Justine, Pak, HuiSong, Miyadera, Hiroko, Corwin, William L, Keller, Grant L J, Hagymasi, Adam T, Shcheglova, Tatiana V, Coukos, George, Baker, Brian M, Mandoiu, Ion I, Bassani-Sternberg, Michal, Srivastava, Pramod K
Published in Nature communications (05.11.2021)
Published in Nature communications (05.11.2021)
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Journal Article
A Phase Ib Study of the Combination of Personalized Autologous Dendritic Cell Vaccine, Aspirin, and Standard of Care Adjuvant Chemotherapy Followed by Nivolumab for Resected Pancreatic Adenocarcinoma-A Proof of Antigen Discovery Feasibility in Three Patients
Bassani-Sternberg, Michal, Digklia, Antonia, Huber, Florian, Wagner, Dorothea, Sempoux, Christine, Stevenson, Brian J, Thierry, Anne-Christine, Michaux, Justine, Pak, HuiSong, Racle, Julien, Boudousquie, Caroline, Balint, Klara, Coukos, George, Gfeller, David, Martin Lluesma, Silvia, Harari, Alexandre, Demartines, Nicolas, Kandalaft, Lana E
Published in Frontiers in immunology (08.08.2019)
Published in Frontiers in immunology (08.08.2019)
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Journal Article
Immunopeptidomics-based identification of naturally presented non-canonical circRNA-derived peptides
Ferreira, Humberto J, Stevenson, Brian J, Pak, HuiSong, Yu, Fengchao, Almeida Oliveira, Jessica, Huber, Florian, Taillandier-Coindard, Marie, Michaux, Justine, Ricart-Altimiras, Emma, Kraemer, Anne I, Kandalaft, Lana E, Speiser, Daniel E, Nesvizhskii, Alexey I, Müller, Markus, Bassani-Sternberg, Michal
Published in Nature communications (15.03.2024)
Published in Nature communications (15.03.2024)
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Journal Article
Mass spectrometry driven exploration reveals nuances of neoepitope-driven tumor rejection
Ebrahimi-Nik, Hakimeh, Michaux, Justine, Corwin, William L, Keller, Grant Lj, Shcheglova, Tatiana, Pak, HuiSong, Coukos, George, Baker, Brian M, Mandoiu, Ion I, Bassani-Sternberg, Michal, Srivastava, Pramod K
Published in JCI insight (25.07.2019)
Published in JCI insight (25.07.2019)
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Journal Article
Bedside formulation of a personalized multi-neoantigen vaccine against mammary carcinoma
Mohsen, Mona O, Speiser, Daniel E, Michaux, Justine, Pak, HuiSong, Stevenson, Brian J, Vogel, Monique, Inchakalody, Varghese Philipose, de Brot, Simone, Dermime, Said, Coukos, Georges, Bassani-Sternberg, Michal, Bachmann, Martin F
Published in Journal for immunotherapy of cancer (01.01.2022)
Published in Journal for immunotherapy of cancer (01.01.2022)
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Journal Article
Deciphering the Mechanisms of Improved Immunogenicity of Hypochlorous Acid-Treated Antigens in Anti-Cancer Dendritic Cell-Based Vaccines
Graciotti, Michele, Marino, Fabio, Pak, HuiSong, Baumgaertner, Petra, Thierry, Anne-Christine, Chiffelle, Johanna, Perez, Marta A. S., Zoete, Vincent, Harari, Alexandre, Bassani-Sternberg, Michal, Kandalaft, Lana E.
Published in Vaccines (Basel) (02.06.2020)
Published in Vaccines (Basel) (02.06.2020)
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Journal Article
Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction
Pak, HuiSong, Michaux, Justine, Huber, Florian, Chong, Chloe, Stevenson, Brian J., Müller, Markus, Coukos, George, Bassani-Sternberg, Michal
Published in Molecular & cellular proteomics (01.01.2021)
Published in Molecular & cellular proteomics (01.01.2021)
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Journal Article
A Cluster of Evolutionarily Recent KRAB Zinc Finger Proteins Protects Cancer Cells from Replicative Stress-Induced Inflammation
Martins, Filipe, Rosspopoff, Olga, Carlevaro-Fita, Joana, Forey, Romain, Offner, Sandra, Planet, Evarist, Pulver, Cyril, Pak, HuiSong, Huber, Florian, Michaux, Justine, Bassani-Sternberg, Michal, Turelli, Priscilla, Trono, Didier
Published in Cancer research (Chicago, Ill.) (15.03.2024)
Published in Cancer research (Chicago, Ill.) (15.03.2024)
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Journal Article
CIITA-Transduced Glioblastoma Cells Uncover a Rich Repertoire of Clinically Relevant Tumor-Associated HLA-II Antigens
Forlani, Greta, Michaux, Justine, Pak, HuiSong, Huber, Florian, Marie Joseph, Elodie Lauret, Ramia, Elise, Stevenson, Brian J., Linnebacher, Michael, Accolla, Roberto S., Bassani-Sternberg, Michal
Published in Molecular & cellular proteomics (01.01.2021)
Published in Molecular & cellular proteomics (01.01.2021)
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Journal Article
Abstract PL02-02: Immunopeptidomics: Accelerating the development of personalized cancer immunotherapy
Bassani-Sternberg, Michal, Chong, Chloe, Marino, Fabio, Pak, HuiSong, Gfeller, David, Müller, Markus, Coukos, George
Published in Molecular cancer therapeutics (01.01.2018)
Published in Molecular cancer therapeutics (01.01.2018)
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Journal Article
Mass spectroscopy-defined neoepitopes are a rich source of tumor rejection-mediating neoepitopes in a mouse sarcoma
Ebrahimi-Nik, Hakimeh, Shcheglova, Tatiana, Michaux, Justine, Pak, HuiSong, Sherafat, Elham, Al Seesi, Sahar, Mandoiu, Ion I, Bassani-Sternberg, Michal, Srivastava, Pramod K
Published in The Journal of immunology (1950) (01.05.2019)
Published in The Journal of immunology (1950) (01.05.2019)
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Journal Article
The immunopeptidome landscape associated with T cell infiltration, inflammation and immune editing in lung cancer
Kraemer, Anne I, Chong, Chloe, Huber, Florian, Pak, HuiSong, Stevenson, Brian J, Müller, Markus, Michaux, Justine, Altimiras, Emma Ricart, Rusakiewicz, Sylvie, Simó-Riudalbas, Laia, Planet, Evarist, Wiznerowicz, Maciej, Dagher, Julien, Trono, Didier, Coukos, George, Tissot, Stephanie, Bassani-Sternberg, Michal
Published in Nature cancer (01.05.2023)
Published in Nature cancer (01.05.2023)
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Journal Article
CIITA-transduced glioblastoma cells uncover a rich repertoire of clinically relevant tumor-associated HLA-II antigens
Forlani, Greta, Michaux, Justine, Pak, HuiSong, Huber, Florian, Lauret Marie Joseph, Elodie, Ramia, Elise, Stevenson, Brian J, Linnebacher, Michael, Accolla, Roberto, Bassani-Sternberg, Michal
Published in Molecular & cellular proteomics (22.09.2020)
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Published in Molecular & cellular proteomics (22.09.2020)
Journal Article
Bedside formulation of a personalized multi-neoantigen vaccine against mammary carcinoma
Mohsen, Mona O, Speiser, Daniel E, Michaux, Justine, Pak, Huisong, Stevenson, Brian J, Vogel, Monique, Inchakalody, Varghese P, De Brot, Simone, Coukos, George, Dermime, Said, Bassani-Sternberg, Michal, Bachmann, Martin F
Published in bioRxiv (26.04.2021)
Published in bioRxiv (26.04.2021)
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Paper
Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome
Mylonas, Roman, Beer, Ilan, Iseli, Christian, Chong, Chloe, Pak, Huisong, Gfeller, David, Coukos, George, Xenarios, Ioannis, Mueller, Markus, Bassani-Sternberg, Michal
Published in bioRxiv (18.05.2018)
Published in bioRxiv (18.05.2018)
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Paper
Integrated Proteogenomic Deep Sequencing and Analytics Accurately Identify Non-Canonical Peptides in Tumor Immunopeptidomes
Chong, Chloe, Muller, Markus, Pak, Huisong, Harnett, Dermot, Huber, Florian, Grun, Delphine, Leleu, Marion, Auger, Aymeric, Arnaud, Marion, Stevenson, Brian J, Michaux, Justine, Bilic, Ilija, Hirsekorn, Antje, Calviello, Lorenzo, Simo-Riudalbas, Laia, Planet, Evarist, Lubinski, Jan, Bryskiewicz, Marta, Wiznerowicz, Maciej, Xenarios, Ioannis, Zhang, Lin, Trono, Didier, Harari, Alexandre, Ohler, Uwe, Coukos, George, Bassani-Sternberg, Michal
Published in bioRxiv (06.09.2019)
Published in bioRxiv (06.09.2019)
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