Whole-body cellular mapping in mouse using standard IgG antibodies
Mai, Hongcheng, Luo, Jie, Hoeher, Luciano, Al-Maskari, Rami, Horvath, Izabela, Chen, Ying, Kofler, Florian, Piraud, Marie, Paetzold, Johannes C., Modamio, Jennifer, Todorov, Mihail, Elsner, Markus, Hellal, Farida, Ertürk, Ali
Published in Nature biotechnology (01.04.2024)
Published in Nature biotechnology (01.04.2024)
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Journal Article
Differentially Private Graph Neural Networks for Whole-Graph Classification
Mueller, Tamara T., Paetzold, Johannes C., Prabhakar, Chinmay, Usynin, Dmitrii, Rueckert, Daniel, Kaissis, Georgios
Published in IEEE transactions on pattern analysis and machine intelligence (01.06.2023)
Published in IEEE transactions on pattern analysis and machine intelligence (01.06.2023)
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Journal Article
clDice - a Novel Topology-Preserving Loss Function for Tubular Structure Segmentation
Shit, Suprosanna, Paetzold, Johannes C., Sekuboyina, Anjany, Ezhov, Ivan, Unger, Alexander, Zhylka, Andrey, Pluim, Josien P. W., Bauer, Ulrich, Menze, Bjoern H.
Published in 2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) (01.06.2021)
Published in 2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) (01.06.2021)
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Conference Proceeding
VerSe: A Vertebrae labelling and segmentation benchmark for multi-detector CT images
Sekuboyina, Anjany, Husseini, Malek E., Bayat, Amirhossein, Löffler, Maximilian, Liebl, Hans, Li, Hongwei, Tetteh, Giles, Kukačka, Jan, Payer, Christian, Štern, Darko, Urschler, Martin, Chen, Maodong, Cheng, Dalong, Lessmann, Nikolas, Hu, Yujin, Wang, Tianfu, Yang, Dong, Xu, Daguang, Ambellan, Felix, Amiranashvili, Tamaz, Ehlke, Moritz, Lamecker, Hans, Lehnert, Sebastian, Lirio, Marilia, Olaguer, Nicolás Pérez de, Ramm, Heiko, Sahu, Manish, Tack, Alexander, Zachow, Stefan, Jiang, Tao, Ma, Xinjun, Angerman, Christoph, Wang, Xin, Brown, Kevin, Kirszenberg, Alexandre, Puybareau, Élodie, Chen, Di, Bai, Yiwei, Rapazzo, Brandon H., Yeah, Timyoas, Zhang, Amber, Xu, Shangliang, Hou, Feng, He, Zhiqiang, Zeng, Chan, Xiangshang, Zheng, Liming, Xu, Netherton, Tucker J., Mumme, Raymond P., Court, Laurence E., Huang, Zixun, He, Chenhang, Wang, Li-Wen, Ling, Sai Ho, Huỳnh, Lê Duy, Boutry, Nicolas, Jakubicek, Roman, Chmelik, Jiri, Mulay, Supriti, Sivaprakasam, Mohanasankar, Paetzold, Johannes C., Shit, Suprosanna, Ezhov, Ivan, Wiestler, Benedikt, Glocker, Ben, Valentinitsch, Alexander, Rempfler, Markus, Menze, Björn H., Kirschke, Jan S.
Published in Medical image analysis (01.10.2021)
Published in Medical image analysis (01.10.2021)
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Journal Article
Learn-Morph-Infer: A new way of solving the inverse problem for brain tumor modeling
Ezhov, Ivan, Scibilia, Kevin, Franitza, Katharina, Steinbauer, Felix, Shit, Suprosanna, Zimmer, Lucas, Lipkova, Jana, Kofler, Florian, Paetzold, Johannes C., Canalini, Luca, Waldmannstetter, Diana, Menten, Martin J., Metz, Marie, Wiestler, Benedikt, Menze, Bjoern
Published in Medical image analysis (01.01.2023)
Published in Medical image analysis (01.01.2023)
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Journal Article
An automatic multi-tissue human fetal brain segmentation benchmark using the Fetal Tissue Annotation Dataset
Payette, Kelly, de Dumast, Priscille, Kebiri, Hamza, Ezhov, Ivan, Paetzold, Johannes C., Shit, Suprosanna, Iqbal, Asim, Khan, Romesa, Kottke, Raimund, Grehten, Patrice, Ji, Hui, Lanczi, Levente, Nagy, Marianna, Beresova, Monika, Nguyen, Thi Dao, Natalucci, Giancarlo, Karayannis, Theofanis, Menze, Bjoern, Bach Cuadra, Meritxell, Jakab, Andras
Published in Scientific data (06.07.2021)
Published in Scientific data (06.07.2021)
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Journal Article
Synthetic Optical Coherence Tomography Angiographs for Detailed Retinal Vessel Segmentation Without Human Annotations
Kreitner, Linus, Paetzold, Johannes C., Rauch, Nikolaus, Chen, Chen, Hagag, Ahmed M., Fayed, Alaa E., Sivaprasad, Sobha, Rausch, Sebastian, Weichsel, Julian, Menze, Bjoern H., Harders, Matthias, Knier, Benjamin, Rueckert, Daniel, Menten, Martin J.
Published in IEEE transactions on medical imaging (01.06.2024)
Published in IEEE transactions on medical imaging (01.06.2024)
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Journal Article
A deep learning approach to predict collateral flow in stroke patients using radiomic features from perfusion images
Tetteh, Giles, Navarro, Fernando, Meier, Raphael, Kaesmacher, Johannes, Paetzold, Johannes C, Kirschke, Jan S, Zimmer, Claus, Wiest, Roland, Menze, Bjoern H
Published in Frontiers in neurology (21.02.2023)
Published in Frontiers in neurology (21.02.2023)
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Journal Article
Geometry-Aware Neural Solver for Fast Bayesian Calibration of Brain Tumor Models
Ezhov, Ivan, Mot, Tudor, Shit, Suprosanna, Lipkova, Jana, Paetzold, Johannes C., Kofler, Florian, Pellegrini, Chantal, Kollovieh, Marcel, Navarro, Fernando, Li, Hongwei, Metz, Marie, Wiestler, Benedikt, Menze, Bjoern
Published in IEEE transactions on medical imaging (01.05.2022)
Published in IEEE transactions on medical imaging (01.05.2022)
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Journal Article
Anthropogenic CO2 emissions assessment of Nile Delta using XCO2 and SIF data from OCO-2 satellite
Shekhar, Ankit, Chen, Jia, Paetzold, Johannes C, Dietrich, Florian, Zhao, Xinxu, Bhattacharjee, Shrutilipi, Ruisinger, Veronika, Wofsy, Steven C
Published in Environmental research letters (01.09.2020)
Published in Environmental research letters (01.09.2020)
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Journal Article
Machine Learning Analysis of Human Skin by Optoacoustic Mesoscopy for Automated Extraction of Psoriasis and Aging Biomarkers
He, Hailong, Paetzold, Johannes C., Borner, Nils, Riedel, Erik, Gerl, Stefan, Schneider, Simon, Fisher, Chiara, Ezhov, Ivan, Shit, Suprosanna, Li, Hongwei, Ruckert, Daniel, Aguirre, Juan, Biedermann, Tilo, Darsow, Ulf, Menze, Bjoern, Ntziachristos, Vasilis
Published in IEEE transactions on medical imaging (01.06.2024)
Published in IEEE transactions on medical imaging (01.06.2024)
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Journal Article
Generating synthetic high-resolution spinal STIR and T1w images from T2w FSE and low-resolution axial Dixon
Graf, Robert, Platzek, Paul-Sören, Riedel, Evamaria Olga, Kim, Su Hwan, Lenhart, Nicolas, Ramschütz, Constanze, Paprottka, Karolin Johanna, Kertels, Olivia Ruriko, Möller, Hendrik Kristian, Atad, Matan, Bülow, Robin, Werner, Nicole, Völzke, Henry, Schmidt, Carsten Oliver, Wiestler, Benedikt, Paetzold, Johannes C, Rueckert, Daniel, Kirschke, Jan Stefan
Published in European radiology (04.09.2024)
Published in European radiology (04.09.2024)
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Journal Article
Link Prediction for Flow-Driven Spatial Networks
Wittmann, Bastian, Paetzold, Johannes C., Prabhakar, Chinmay, Rueckert, Daniel, Menze, Bjoern
Published in 2024 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV) (03.01.2024)
Published in 2024 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV) (03.01.2024)
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Conference Proceeding
Assessing urban methane emissions using column-observing portable Fourier transform infrared (FTIR) spectrometers and a novel Bayesian inversion framework
Jones, Taylor S, Franklin, Jonathan E, Chen, Jia, Dietrich, Florian, Hajny, Kristian D, Paetzold, Johannes C, Wenzel, Adrian, Gately, Conor, Gottlieb, Elaine, Parker, Harrison, Dubey, Manvendra, Hase, Frank, Shepson, Paul B, Mielke, Levi H, Wofsy, Steven C
Published in Atmospheric chemistry and physics (06.09.2021)
Published in Atmospheric chemistry and physics (06.09.2021)
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Journal Article
Retinal vasculature of different diameters and plexuses exhibit distinct vulnerability in varying severity of diabetic retinopathy
Fayed, Alaa E., Menten, Martin J., Kreitner, Linus, Paetzold, Johannes C., Rueckert, Daniel, Bassily, Sherry M., Fikry, Ramy R., Hagag, Ahmed M., Sivaprasad, Sobha
Published in Eye (London) (01.06.2024)
Published in Eye (London) (01.06.2024)
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Journal Article
Machine learning analysis of whole mouse brain vasculature
Todorov, Mihail Ivilinov, Paetzold, Johannes Christian, Schoppe, Oliver, Tetteh, Giles, Shit, Suprosanna, Efremov, Velizar, Todorov-Völgyi, Katalin, Düring, Marco, Dichgans, Martin, Piraud, Marie, Menze, Bjoern, Ertürk, Ali
Published in Nature methods (01.04.2020)
Published in Nature methods (01.04.2020)
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Journal Article
Robust, Primitive, and Unsupervised Quality Estimation for Segmentation Ensembles
Kofler, Florian, Ezhov, Ivan, Fidon, Lucas, Pirkl, Carolin M, Paetzold, Johannes C, Burian, Egon, Pati, Sarthak, El Husseini, Malek, Navarro, Fernando, Shit, Suprosanna, Kirschke, Jan, Bakas, Spyridon, Zimmer, Claus, Wiestler, Benedikt, Menze, Bjoern H
Published in Frontiers in neuroscience (30.12.2021)
Published in Frontiers in neuroscience (30.12.2021)
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Journal Article
Differentially Private Guarantees for Analytics and Machine Learning on Graphs: A Survey of Results
Mueller, Tamara T., Usynin, Dmitrii, Paetzold, Johannes C., Braren, Rickmer, Rueckert, Daniel, Kaissis, Georgios
Published in The journal of privacy and confidentiality (11.02.2024)
Published in The journal of privacy and confidentiality (11.02.2024)
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Journal Article