Spatial domain analysis predicts risk of colorectal cancer recurrence and infers associated tumor microenvironment networks
Uttam, Shikhar, Stern, Andrew M., Sevinsky, Christopher J., Furman, Samantha, Pullara, Filippo, Spagnolo, Daniel, Nguyen, Luong, Gough, Albert, Ginty, Fiona, Lansing Taylor, D., Chakra Chennubhotla, S.
Published in Nature communications (14.07.2020)
Published in Nature communications (14.07.2020)
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Journal Article
Explainable AI (xAI) for Anatomic Pathology
Tosun, Akif B, Pullara, Filippo, Becich, Michael J, Taylor, D Lansing, Fine, Jeffrey L, Chennubhotla, S Chakra
Published in Advances in anatomic pathology (01.07.2020)
Published in Advances in anatomic pathology (01.07.2020)
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Journal Article
Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble
Barnes, Christopher O., Calero, Monica, Malik, Indranil, Graham, Brian W., Spahr, Henrik, Lin, Guowu, Cohen, Aina E., Brown, Ian S., Zhang, Qiangmin, Pullara, Filippo, Trakselis, Michael A., Kaplan, Craig D., Calero, Guillermo
Published in Molecular cell (16.07.2015)
Published in Molecular cell (16.07.2015)
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Journal Article
NADPH oxidase 2 activity disrupts Calmodulin/CaMKIIα complex via redox modifications of CaMKIIα-contained Cys30 and Cys289: Implications in Parkinson's disease
Pullara, Filippo, Forsmann, Madison C., General, Ignacio J., Ayoob, Joseph C., Furbee, Emily, Castro, Sandra L., Hu, Xiaoping, Greenamyre, J. Timothy, Di Maio, Roberto
Published in Redox biology (01.09.2024)
Published in Redox biology (01.09.2024)
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Journal Article
Abstract 3172: 1 Unsupervised cellular phenotypic hierarchy enables spatial intratumor heterogeneity characterization, recurrence-associated microdomains discovery, and harnesses network biology from hyperplexed in-situ fluorescence images of colorectal carcinoma
Furman, Samantha, Stern, Andrew, Uttam, Shikhar, Lansing, Taylor D., Filippo, Pullara, Chennubhotla, S. CHAKRA
Published in Cancer research (Chicago, Ill.) (01.07.2021)
Published in Cancer research (Chicago, Ill.) (01.07.2021)
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Journal Article
Pathologic response rates to neoadjuvant pembrolizumab in locally advanced (LA) resectable cutaneous squamous cell carcinoma (cSCC)
Amatore, Florent, Sridharan, Shaum, Karunamurthy, Arivarasan, Wang, Hong, Patel, Ravi, Pugliano-Mauro, Melissa, Kim, Seungwon, Choudry, Mohammad Haroon Asif, Pingpank, James F., Holtzman, Matthew Peter, Duvvuri, Uma Maheswari, Ferris, Robert L., Luke, Jason J., Kirkwood, John M., Najjar, Yana G., Pullara, Filippo, Chennubhotla, Chakra, Zarour, Hassane M., Davar, Diwakar
Published in Journal of clinical oncology (01.06.2024)
Published in Journal of clinical oncology (01.06.2024)
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Journal Article
Mechanisms of Activation and Subunit Release in Ca2+/Calmodulin-Dependent Protein Kinase II
Pullara, Filippo, Asciutto, Eliana K, General, Ignacio J
Published in The journal of physical chemistry. B (16.11.2017)
Published in The journal of physical chemistry. B (16.11.2017)
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Journal Article
Abstract 1642: Spatial proteomics with hyperplexed fluorescence imaging predicts risk of colorectal cancer recurrence and infers recurrence-specific protein-protein networks
Uttam, Shikhar, Stern, Andrew M., Furman, Samantha A., Pullara, Filippo, Ginty, Fiona, Taylor, D. Lansing, Chennubhotla, S. Chakra
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
HistoMapr™: An Explainable AI (xAI) Platform for Computational Pathology Solutions
Tosun, Akif Burak, Pullara, Filippo, Becich, Michael J., Taylor, D. Lansing, Chennubhotla, S. Chakra, Fine, Jeffrey L.
Published in Artificial Intelligence and Machine Learning for Digital Pathology (2020)
Published in Artificial Intelligence and Machine Learning for Digital Pathology (2020)
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Book Chapter
Abstract 5445: Segmentation-free analysis of multiplexed images with unbiased spatial analytics and explainable AI for predicting disease outcomes
Pullara, Filippo, Falkenstein, Brian, Campbell, Bruce, Panakkal, Samantha, Tosun, Akif Burak, Fine, Jeffrey, Chennubhotla, S. Chakra
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
Early stages of β2-microglobulin aggregation and the inhibiting action of αB-crystallin
Pullara, Filippo, Emanuele, Antonio
Published in Proteins, structure, function, and bioinformatics (01.12.2008)
Published in Proteins, structure, function, and bioinformatics (01.12.2008)
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Journal Article
Network Proteomics: From Protein Structure to Protein-Protein Interaction
Hu, Guang, Di Paola, Luisa, Pullara, Filippo, Liang, Zhongjie, Nookaew, Intawat
Published in BioMed research international (01.01.2017)
Published in BioMed research international (01.01.2017)
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Journal Article
WNT5A Inhibits Hepatocyte Proliferation and Concludes β-Catenin Signaling in Liver Regeneration
Yang, Jing, Cusimano, Antonella, Monga, Jappmann K, Preziosi, Morgan E, Pullara, Filippo, Calero, Guillermo, Lang, Richard, Yamaguchi, Terry P, Nejak-Bowen, Kari N, Monga, Satdarshan P
Published in The American journal of pathology (01.08.2015)
Published in The American journal of pathology (01.08.2015)
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Journal Article
Abstract 454: TumorMapr™ analytical software platform: Unbiased spatial analytics and explainable AI (xAI) platform for generating data, extracting information, and creating knowledge from multi to hyperplexed fluorescence and/or mass spectrometry image datasets
Panakkal, Samantha, Falkenstein, Brian, Tosun, Akif Burak, Campbell, Bruce, Becich, Michael, Fine, Jeffrey, Taylor, D. Lansing, Chennubhotla, S. Chakra, Pullara, Filippo
Published in Cancer research (Chicago, Ill.) (15.06.2022)
Published in Cancer research (Chicago, Ill.) (15.06.2022)
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Journal Article
Structure-Function Studies of Detergent Solubilized PTH1R-GαSβγ
Stevenson, Hilary P., Zhang, Qiangm, Pullara, Filippo, Calero, Guillermo
Published in Biophysical journal (31.01.2012)
Published in Biophysical journal (31.01.2012)
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Journal Article