Fast and scalable inference of multi-sample cancer lineages
Popic, Victoria, Salari, Raheleh, Hajirasouliha, Iman, Kashef-Haghighi, Dorna, West, Robert B, Batzoglou, Serafim
Published in Genome Biology (06.05.2015)
Published in Genome Biology (06.05.2015)
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Journal Article
Cue: a deep-learning framework for structural variant discovery and genotyping
Popic, Victoria, Rohlicek, Chris, Cunial, Fabio, Hajirasouliha, Iman, Meleshko, Dmitry, Garimella, Kiran, Maheshwari, Anant
Published in Nature methods (01.04.2023)
Published in Nature methods (01.04.2023)
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Journal Article
Secure discovery of genetic relatives across large-scale and distributed genomic data sets
Hong, Matthew M., Froelicher, David, Magner, Ricky, Popic, Victoria, Berger, Bonnie, Cho, Hyunghoon
Published in Genome research (01.09.2024)
Published in Genome research (01.09.2024)
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Journal Article
Meltos: multi-sample tumor phylogeny reconstruction for structural variants
Ricketts, Camir, Seidman, Daniel, Popic, Victoria, Hormozdiari, Fereydoun, Batzoglou, Serafim, Hajirasouliha, Iman
Published in Bioinformatics (15.02.2020)
Published in Bioinformatics (15.02.2020)
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Journal Article
High-throughput RNA isoform sequencing using programmed cDNA concatenation
Al’Khafaji, Aziz M., Smith, Jonathan T., Garimella, Kiran V., Babadi, Mehrtash, Popic, Victoria, Sade-Feldman, Moshe, Gatzen, Michael, Sarkizova, Siranush, Schwartz, Marc A., Blaum, Emily M., Day, Allyson, Costello, Maura, Bowers, Tera, Gabriel, Stacey, Banks, Eric, Philippakis, Anthony A., Boland, Genevieve M., Blainey, Paul C., Hacohen, Nir
Published in Nature biotechnology (01.04.2024)
Published in Nature biotechnology (01.04.2024)
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Journal Article
Fast Metagenomic Binning via Hashing and Bayesian Clustering
Popic, Victoria, Kuleshov, Volodymyr, Snyder, Michael, Batzoglou, Serafim
Published in Journal of computational biology (01.07.2018)
Published in Journal of computational biology (01.07.2018)
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Journal Article
Secure discovery of genetic relatives across large-scale and distributed genomic datasets
Hong, Matthew Man-Hou, Froelicher, David, Magner, Ricky, Popic, Victoria, Berger, Bonnie, Cho, Hyunghoon
Published in Genome research (07.08.2024)
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Published in Genome research (07.08.2024)
Journal Article
Using LICHeE and BAMSE for Reconstructing Cancer Phylogenetic Trees
Ricketts, Camir, Popic, Victoria, Toosi, Hosein, Hajirasouliha, Iman
Published in Current protocols in bioinformatics (01.06.2018)
Published in Current protocols in bioinformatics (01.06.2018)
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Journal Article
DNA DNA SEQUENCING USING HYDROGEL BEADS
KHURANA TARUN KUMAR, RONAGHI MOSTAFA, WU YIR SHYUAN, GORPE YASAR FILIZ, JAEGER ERICH B, POPIC VICTORIA
Year of Publication 06.09.2022
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Year of Publication 06.09.2022
Patent
Secure Discovery of Genetic Relatives across Large-Scale and Distributed Genomic Datasets
Hong, Matthew M, Froelicher, David, Magner, Ricky, Popic, Victoria, Berger, Bonnie, Cho, Hyunghoon
Published in Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) (01.01.2024)
Published in Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) (01.01.2024)
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하이드로겔 비드를 사용한 DNA 서열분석
KHURANA TARUN KUMAR, RONAGHI MOSTAFA, WU YIR SHYUAN, GORPE YASAR FILIZ, JAEGER ERICH B, POPIC VICTORIA
Year of Publication 06.03.2020
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Year of Publication 06.03.2020
Patent
CTAT-LR-fusion: accurate fusion transcript identification from long and short read isoform sequencing at bulk or single cell resolution
Qin, Qian, Popic, Victoria, Yu, Houlin, White, Emily, Khorgade, Akanksha, Shin, Asa, Wienand, Kirsty, Dondi, Arthur, Beerenwinkel, Niko, Vazquez, Francisca, AlKhafaji, Aziz M, Haas, Brian J
Published in bioRxiv (28.02.2024)
Published in bioRxiv (28.02.2024)
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Paper
DNA SEQUENCING USING HYDROGEL BEADS
JAEGER, Erich, B, RONAGHI, Mostafa, GORPE-YASAR, Filiz, KHURANA, Tarun, Kumar, WU, Yir-Shyuan, POPIC, Victoria
Year of Publication 25.10.2023
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Year of Publication 25.10.2023
Patent
DNA SEQUENCING USING HYDROGEL BEADS
GORPE- YASAR, Filiz, KHURANA, Tarun Kumar, RONAGHI, Mostafa, JAEGER, Erich B, WU, Yir-Shyuan, POPIC, Victoria
Year of Publication 11.10.2023
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Year of Publication 11.10.2023
Patent