Search Results - "PLoS computational biology" :: K.UTB vyhledávací portál | TBU Library Retrieval Portal

Covasim: An agent-based model of COVID-19 dynamics and interventions

Covasim: An agent-based model of COVID-19 dynamics and interventions

by Kerr, Cliff C, Stuart, Robyn M, Mistry, Dina, Abeysuriya, Romesh G, Rosenfeld, Katherine, Hart, Gregory R, Núñez, Rafael C, Cohen, Jamie A, Selvaraj, Prashanth, Hagedorn, Brittany, George, Lauren, Jastrzebski, Michal, Izzo, Amanda S, Fowler, Greer, Palmer, Anna, Delport, Dominic, Scott, Nick, Kelly, Sherrie L, Bennette, Caroline S, Wagner, Bradley G, Chang, Stewart T, Oron, Assaf P, Wenger, Edward A, Panovska-Griffiths, Jasmina, Famulare, Michael, Klein, Daniel J
Published in PLoS computational biology (26.07.2021)

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RESCRIPt: Reproducible sequence taxonomy reference database management

RESCRIPt: Reproducible sequence taxonomy reference database management

by Robeson, 2nd, Michael S, O'Rourke, Devon R, Kaehler, Benjamin D, Ziemski, Michal, Dillon, Matthew R, Foster, Jeffrey T, Bokulich, Nicholas A
Published in PLoS computational biology (01.11.2021)

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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

by Wick, Ryan R, Judd, Louise M, Gorrie, Claire L, Holt, Kathryn E
Published in PLoS computational biology (01.06.2017)

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MUMmer4: A fast and versatile genome alignment system

MUMmer4: A fast and versatile genome alignment system

by Marçais, Guillaume, Delcher, Arthur L, Phillippy, Adam M, Coston, Rachel, Salzberg, Steven L, Zimin, Aleksey
Published in PLoS computational biology (01.01.2018)

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Integrating Hi-C links with assembly graphs for chromosome-scale assembly

Integrating Hi-C links with assembly graphs for chromosome-scale assembly

by Ghurye, Jay, Rhie, Arang, Walenz, Brian P, Schmitt, Anthony, Selvaraj, Siddarth, Pop, Mihai, Phillippy, Adam M, Koren, Sergey
Published in PLoS computational biology (01.08.2019)

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MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

by Huson, Daniel H, Beier, Sina, Flade, Isabell, Górska, Anna, El-Hadidi, Mohamed, Mitra, Suparna, Ruscheweyh, Hans-Joachim, Tappu, Rewati
Published in PLoS computational biology (01.06.2016)

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Transcriptomics technologies

Transcriptomics technologies

by Lowe, Rohan, Shirley, Neil, Bleackley, Mark, Dolan, Stephen, Shafee, Thomas
Published in PLoS computational biology (01.05.2017)

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DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences

DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences

by Lee, Ingoo, Keum, Jongsoo, Nam, Hojung
Published in PLoS computational biology (01.06.2019)

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Deep convolutional networks do not classify based on global object shape

Deep convolutional networks do not classify based on global object shape

by Baker, Nicholas, Lu, Hongjing, Erlikhman, Gennady, Kellman, Philip J
Published in PLoS computational biology (01.12.2018)

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New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx

by Mounir, Mohamed, Lucchetta, Marta, Silva, Tiago C, Olsen, Catharina, Bontempi, Gianluca, Chen, Xi, Noushmehr, Houtan, Colaprico, Antonio, Papaleo, Elena
Published in PLoS computational biology (01.03.2019)

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Sequence determinants of protein phase behavior from a coarse-grained model

Sequence determinants of protein phase behavior from a coarse-grained model

by Dignon, Gregory L, Zheng, Wenwei, Kim, Young C, Best, Robert B, Mittal, Jeetain
Published in PLoS computational biology (01.01.2018)

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Systems biology informed deep learning for inferring parameters and hidden dynamics

Systems biology informed deep learning for inferring parameters and hidden dynamics

by Yazdani, Alireza, Lu, Lu, Raissi, Maziar, Karniadakis, George Em
Published in PLoS computational biology (18.11.2020)

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MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction

MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction

by Chen, Xing, Yin, Jun, Qu, Jia, Huang, Li
Published in PLoS computational biology (01.08.2018)

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PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems

by Ghaffarizadeh, Ahmadreza, Heiland, Randy, Friedman, Samuel H, Mumenthaler, Shannon M, Macklin, Paul
Published in PLoS computational biology (01.02.2018)

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Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

by Foster, Zachary S L, Sharpton, Thomas J, Grünwald, Niklaus J
Published in PLoS computational biology (01.02.2017)

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LASSI: A lattice model for simulating phase transitions of multivalent proteins

LASSI: A lattice model for simulating phase transitions of multivalent proteins

by Choi, Jeong-Mo, Dar, Furqan, Pappu, Rohit V
Published in PLoS computational biology (01.10.2019)

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Waste not, want not: why rarefying microbiome data is inadmissible

Waste not, want not: why rarefying microbiome data is inadmissible

by McMurdie, Paul J, Holmes, Susan
Published in PLoS computational biology (01.04.2014)

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Improved transcriptome assembly using a hybrid of long and short reads with StringTie

Improved transcriptome assembly using a hybrid of long and short reads with StringTie

by Shumate, Alaina, Wong, Brandon, Pertea, Geo, Pertea, Mihaela
Published in PLoS computational biology (01.06.2022)

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Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments

Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments

by Van Valen, David A, Kudo, Takamasa, Lane, Keara M, Macklin, Derek N, Quach, Nicolas T, DeFelice, Mialy M, Maayan, Inbal, Tanouchi, Yu, Ashley, Euan A, Covert, Markus W
Published in PLoS computational biology (01.11.2016)

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ProMod3-A versatile homology modelling toolbox

ProMod3-A versatile homology modelling toolbox

by Studer, Gabriel, Tauriello, Gerardo, Bienert, Stefan, Biasini, Marco, Johner, Niklaus, Schwede, Torsten
Published in PLoS computational biology (28.01.2021)

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