Germline mutations in BAP1 predispose to melanocytic tumors
Wiesner, Thomas, Bastian, Boris C, Speicher, Michael R, Obenauf, Anna C, Murali, Rajmohan, Fried, Isabella, Griewank, Klaus G, Ulz, Peter, Windpassinger, Christian, Wackernagel, Werner, Loy, Shea, Wolf, Ingrid, Viale, Agnes, Lash, Alex E, Pirun, Mono, Socci, Nicholas D, Rütten, Arno, Palmedo, Gabriele, Abramson, David, Offit, Kenneth, Ott, Arthur, Becker, Jürgen C, Cerroni, Lorenzo, Kutzner, Heinz
Published in Nature genetics (01.10.2011)
Published in Nature genetics (01.10.2011)
Get full text
Journal Article
Targeted massively parallel sequencing of angiosarcomas reveals frequent activation of the mitogen activated protein kinase pathway
Murali, Rajmohan, Chandramohan, Raghu, Möller, Inga, Scholz, Simone L, Berger, Michael, Huberman, Kety, Viale, Agnes, Pirun, Mono, Socci, Nicholas D, Bouvier, Nancy, Bauer, Sebastian, Artl, Monika, Schilling, Bastian, Schimming, Tobias, Sucker, Antje, Schwindenhammer, Benjamin, Grabellus, Florian, Speicher, Michael R, Schaller, Jörg, Hillen, Uwe, Schadendorf, Dirk, Mentzel, Thomas, Cheng, Donavan T, Wiesner, Thomas, Griewank, Klaus G
Published in Oncotarget (03.11.2015)
Published in Oncotarget (03.11.2015)
Get full text
Journal Article
Genome Sequencing Identifies a Basis for Everolimus Sensitivity
Iyer, Gopa, Hanrahan, Aphrothiti J., Milowsky, Matthew I., Al-Ahmadie, Hikmat, Scott, Sasinya N., Janakiraman, Manickam, Pirun, Mono, Sander, Chris, Socci, Nicholas D., Ostrovnaya, Irina, Viale, Agnes, Heguy, Adriana, Peng, Luke, Chan, Timothy A., Bochner, Bernard, Bajorin, Dean F., Berger, Michael F., Taylor, Barry S., Solit, David B.
Published in Science (American Association for the Advancement of Science) (12.10.2012)
Published in Science (American Association for the Advancement of Science) (12.10.2012)
Get full text
Journal Article
Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
Rapaport, Franck, Khanin, Raya, Liang, Yupu, Pirun, Mono, Krek, Azra, Zumbo, Paul, Mason, Christopher E, Socci, Nicholas D, Betel, Doron
Published in Genome biology (10.09.2013)
Published in Genome biology (10.09.2013)
Get full text
Journal Article
Mutational landscape of EGFR-, MYC-, and Kras-driven genetically engineered mouse models of lung adenocarcinoma
McFadden, David G., Politi, Katerina, Bhutkar, Arjun, Chen, Frances K., Song, Xiaoling, Pirun, Mono, Santiago, Philip M., Kim-Kiselak, Caroline, Platt, James T., Lee, Emily, Hodges, Emily, Rosebrock, Adam P., Bronson, Roderick T., Socci, Nicholas D., Hannon, Gregory J., Jacks, Tyler, Varmus, Harold
Published in Proceedings of the National Academy of Sciences - PNAS (18.10.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (18.10.2016)
Get full text
Journal Article
The genomic basis of adaptive evolution in threespine sticklebacks
Jones, Felicity C., Grabherr, Manfred G., Chan, Yingguang Frank, Russell, Pamela, Mauceli, Evan, Johnson, Jeremy, Swofford, Ross, Pirun, Mono, Zody, Michael C., White, Simon, Birney, Ewan, Searle, Stephen, Schmutz, Jeremy, Grimwood, Jane, Dickson, Mark C., Myers, Richard M., Miller, Craig T., Summers, Brian R., Knecht, Anne K., Brady, Shannon D., Zhang, Haili, Pollen, Alex A., Howes, Timothy, Amemiya, Chris, Lander, Eric S., Di Palma, Federica, Lindblad-Toh, Kerstin, Kingsley, David M.
Published in Nature (London) (05.04.2012)
Published in Nature (London) (05.04.2012)
Get full text
Journal Article
A recurrent neomorphic mutation in MYOD1 defines a clinically aggressive subset of embryonal rhabdomyosarcoma associated with PI3K-AKT pathway mutations
Kohsaka, Shinji, Shukla, Neerav, Ameur, Nabahet, Ito, Tatsuo, Ng, Charlotte K Y, Wang, Lu, Lim, Diana, Marchetti, Angela, Viale, Agnes, Pirun, Mono, Socci, Nicholas D, Qin, Li-Xuan, Sciot, Raf, Bridge, Julia, Singer, Samuel, Meyers, Paul, Wexler, Leonard H, Barr, Frederic G, Dogan, Snjezana, Fletcher, Jonathan A, Reis-Filho, Jorge S, Ladanyi, Marc
Published in Nature genetics (01.06.2014)
Published in Nature genetics (01.06.2014)
Get full text
Journal Article
Metastatic Competence Can Emerge with Selection of Preexisting Oncogenic Alleles without a Need of New Mutations
Jacob, Leni S, Vanharanta, Sakari, Obenauf, Anna C, Pirun, Mono, Viale, Agnes, Socci, Nicholas D, Massagué, Joan
Published in Cancer research (Chicago, Ill.) (15.09.2015)
Published in Cancer research (Chicago, Ill.) (15.09.2015)
Get full text
Journal Article
An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts
Hoeppner, Marc P, Lundquist, Andrew, Pirun, Mono, Meadows, Jennifer R S, Zamani, Neda, Johnson, Jeremy, Sundström, Görel, Cook, April, FitzGerald, Michael G, Swofford, Ross, Mauceli, Evan, Moghadam, Behrooz Torabi, Greka, Anna, Alföldi, Jessica, Abouelleil, Amr, Aftuck, Lynne, Bessette, Daniel, Berlin, Aaron, Brown, Adam, Gearin, Gary, Lui, Annie, Macdonald, J Pendexter, Priest, Margaret, Shea, Terrance, Turner-Maier, Jason, Zimmer, Andrew, Lander, Eric S, di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Manfred G
Published in PloS one (13.03.2014)
Published in PloS one (13.03.2014)
Get full text
Journal Article
Lineage-specific biology revealed by a finished genome assembly of the mouse
Church, Deanna M, Goodstadt, Leo, Hillier, Ladeana W, Zody, Michael C, Goldstein, Steve, She, Xinwe, Bult, Carol J, Agarwala, Richa, Cherry, Joshua L, DiCuccio, Michael, Hlavina, Wratko, Kapustin, Yuri, Meric, Peter, Maglott, Donna, Birtle, Zoë, Marques, Ana C, Graves, Tina, Zhou, Shiguo, Teague, Brian, Potamousis, Konstantinos, Churas, Christopher, Place, Michael, Herschleb, Jill, Runnheim, Ron, Forrest, Daniel, Amos-Landgraf, James, Schwartz, David C, Cheng, Ze, Lindblad-Toh, Kerstin, Eichler, Evan E, Ponting, Chris P
Published in PLoS biology (26.05.2009)
Published in PLoS biology (26.05.2009)
Get full text
Journal Article
Synthetic lethality in ATM-deficient RAD50-mutant tumors underlies outlier response to cancer therapy
Al-Ahmadie, Hikmat, Iyer, Gopa, Hohl, Marcel, Asthana, Saurabh, Inagaki, Akiko, Schultz, Nikolaus, Hanrahan, Aphrothiti J, Scott, Sasinya N, Brannon, A Rose, McDermott, Gregory C, Pirun, Mono, Ostrovnaya, Irina, Kim, Philip, Socci, Nicholas D, Viale, Agnes, Schwartz, Gary K, Reuter, Victor, Bochner, Bernard H, Rosenberg, Jonathan E, Bajorin, Dean F, Berger, Michael F, Petrini, John H J, Solit, David B, Taylor, Barry S
Published in Cancer discovery (01.09.2014)
Published in Cancer discovery (01.09.2014)
Get full text
Journal Article
Erratum to: Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
Rapaport, Franck, Khanin, Raya, Liang, Yupu, Pirun, Mono, Krek, Azra, Zumbo, Paul, Mason, Christopher E, Socci, Nicholas D, Betel, Doron
Published in Genome Biology (23.11.2015)
Published in Genome Biology (23.11.2015)
Get full text
Journal Article
Metastatic competence can emerge with selection of pre-existing oncogenic alleles without a need of new mutations
Jacob, Leni S., Vanharanta, Sakari, Obenauf, Anna C., Pirun, Mono, Viale, Agnes, Socci, Nicholas D., Massagué, Joan
Published in Cancer research (Chicago, Ill.) (24.07.2015)
Published in Cancer research (Chicago, Ill.) (24.07.2015)
Get full text
Journal Article
Abstract 3892: Systematic generation of a clinicogenomic harmonized oncologic real-world dataset (MSK-CHORD)
Fong, Christopher J., Pichotta, Karl, Tran, Thinh, Waters, Michele, Fu, Tom, Pirun, Mono, Altoe, Mirella, Mastrogiacomo, Brooke, Luthra, Anisha, Ahmed, Mehnaj, Pasha, Arfath, Kohli, Armaan, Lim, Raymond, Pollard, Tom, Moore, Darin, Gross, Benjamin, Wang, Avery, Chennault, Calla, Kundra, Ritika, Madupuri, Ramyasree, de Bruijn, Ino, Lisman, Aaron, Chatila, Walid K., Nandakumar, Subhiksha, Begum, Anika, Rose, Doori, Kehl, Kenneth L., Schrag, Deborah, Berger, Michael, Carrot-Zhang, Jian, Razavi, Pedram, Li, Bob, Stetson, Peter, Schultz, Nikolaus, Jee, Justin
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Get full text
Journal Article
Tumor MHC Class I Expression Associates with Intralesional IL2 Response in Melanoma
Pourmaleki, Maryam, Jones, Caitlin J, Ariyan, Charlotte E, Zeng, Zheng, Pirun, Mono, Navarrete, Daniel A, Li, Yanyun, Zhang, Mianlei, Nandakumar, Subhiksha, Campos, Carl, Nadeem, Saad, Klimstra, David S, Temple-Oberle, Claire F, Brenn, Thomas, Lipson, Evan J, Schenk, Kara M, Stein, Julie E, Taube, Janis M, White, Michael G, Traweek, Raymond, Wargo, Jennifer A, Kirkwood, John M, Gasmi, Billel, Goff, Stephanie L, Corwin, Alex D, McDonough, Elizabeth, Ginty, Fiona, Callahan, Margaret K, Schietinger, Andrea, Socci, Nicholas D, Mellinghoff, Ingo K, Hollmann, Travis J
Published in Cancer immunology research (01.03.2022)
Published in Cancer immunology research (01.03.2022)
Get more information
Journal Article
Next-Generation Sequencing Suggests Complex, Heterogeneous Pathogenesis In Peripheral T-Cell Lymphoma Unspecified
Schatz, Jonathan H., Horwitz, Steven M., Lunning, Matthew A., Dolgalev, Igor, Huberman, Kety, Heguy, Adriana, Viale, Agnes, Socci, Nicholas D., Pirun, Mono, Teruya-Feldstein, Julie, Wendel, Hans-Guido
Published in Blood (15.11.2013)
Published in Blood (15.11.2013)
Get full text
Journal Article
Synthetic lethality in ATM-deficient RAD50-mutant tumors underlie outlier response to cancer therapy
Al-Ahmadie, Hikmat, Iyer, Gopa, Hohl, Marcel, Asthana, Saurabh, Inagaki, Akiko, Schultz, Nikolaus, Hanrahan, Aphrothiti J., Scott, Sasinya N., Brannon, A. Rose, McDermott, Gregory C., Pirun, Mono, Ostrovnaya, Irina, Kim, Philip, Socci, Nicholas D., Viale, Agnes, Schwartz, Gary K., Reuter, Victor, Bochner, Bernard H., Rosenberg, Jonathan E., Bajorin, Dean F., Berger, Michael F., Petrini, John H.J., Solit, David B., Taylor, Barry S.
Published in Cancer discovery (16.06.2014)
Published in Cancer discovery (16.06.2014)
Get full text
Journal Article
Abstract LB-125: Germline mutations in BAP1 predispose to melanocytic nevi and melanoma
Wiesner, Thomas, Obenauf, Anna, Murali, Rajmohan, Fried, Isabella, Griewank, Klaus, Ulz, Peter, Windpassinger, Christian, Loy, Shea, Wackernagel, Werner, Wolf, Ingrid, Becker, Juergen, Viale, Agnes, Lash, Alex, Pirun, Mono, Socci, Nick, Ruetten, Arno, Palmedo, Gabrielle, Ott, Arthur, Abramson, David, Offit, Kenneth, Cerroni, Lorenzo, Kutzner, Heinz, Bastian, Boris, Speicher, Michael
Published in Cancer research (Chicago, Ill.) (15.04.2011)
Published in Cancer research (Chicago, Ill.) (15.04.2011)
Get full text
Journal Article
Abstract LB-151: Targeted gene resequencing in a K-ras-dependent mouse model of metastatic lung adenocarcinoma
McFadden, David G., Xuan, Zhenyu, Rosebrock, Adam, Politi, Katerina, Santiago, Philip, Hodges, Emily, Winslow, Monte, Hiramatsu, Nobuhito, Pirun, Mono, Crowley, Denise, Bronson, Roderick, Socci, Nicholas, Varmus, Harold, Hannon, Greg, Jacks, Tyler
Published in Cancer research (Chicago, Ill.) (15.04.2010)
Published in Cancer research (Chicago, Ill.) (15.04.2010)
Get full text
Journal Article
An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts: e91172
Hoeppner, Marc P, Lundquist, Andrew, Pirun, Mono, Meadows, Jennifer RS, Zamani, Neda, Johnson, Jeremy, Sundstrom, Gorel, Cook, April, FitzGerald, Michael G, Swofford, Ross
Published in PloS one (01.03.2014)
Published in PloS one (01.03.2014)
Get full text
Journal Article