Rocker: Open source, easy-to-use tool for AUC and enrichment calculations and ROC visualization
Lätti, Sakari, Niinivehmas, Sanna, Pentikäinen, Olli T.
Published in Journal of cheminformatics (07.09.2016)
Published in Journal of cheminformatics (07.09.2016)
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Journal Article
신규 헤테로시클릭 화합물, 조성물, 이의 제조 방법 및 용도
ILLIKAINEN KAISA, PENTIKAEINEN OLLI, STJERNSCHANTZ CAMILLA, LINNANEN TERO, NIINIVEHMAS SANNA, HIRVELAE LEENA, HAKOLA MARJO
Year of Publication 09.04.2024
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Year of Publication 09.04.2024
Patent
Ultrafast protein structure-based virtual screening with Panther
Niinivehmas, Sanna P., Salokas, Kari, Lätti, Sakari, Raunio, Hannu, Pentikäinen, Olli T.
Published in Journal of computer-aided molecular design (01.10.2015)
Published in Journal of computer-aided molecular design (01.10.2015)
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Case-specific performance of MM-PBSA, MM-GBSA, and SIE in virtual screening
Virtanen, Salla I., Niinivehmas, Sanna P., Pentikäinen, Olli T.
Published in Journal of molecular graphics & modelling (01.11.2015)
Published in Journal of molecular graphics & modelling (01.11.2015)
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Journal Article
Temperature-dependent mutational robustness can explain faster molecular evolution at warm temperatures, affecting speciation rate and global patterns of species diversity
Puurtinen, Mikael, Elo, Merja, Jalasvuori, Matti, Kahilainen, Aapo, Ketola, Tarmo, Kotiaho, Janne S., Mönkkönen, Mikko, Pentikäinen, Olli T.
Published in Ecography (Copenhagen) (01.11.2016)
Published in Ecography (Copenhagen) (01.11.2016)
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Journal Article
Structure of three tandem filamin domains reveals auto-inhibition of ligand binding
Lad, Yatish, Kiema, Tiila, Jiang, Pengju, Pentikäinen, Olli T, Coles, Charlotte H, Campbell, Iain D, Calderwood, David A, Ylänne, Jari
Published in The EMBO journal (05.09.2007)
Published in The EMBO journal (05.09.2007)
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L-Arabinose/D-galactose 1-dehydrogenase of Rhizobium leguminosarum bv. trifolii characterised and applied for bioconversion of L-arabinose to L-arabonate with Saccharomyces cerevisiae
Aro-Kärkkäinen, Niina, Toivari, Mervi, Maaheimo, Hannu, Ylilauri, Mikko, Pentikäinen, Olli T, Andberg, Martina, Oja, Merja, Penttilä, Merja, Wiebe, Marilyn G, Ruohonen, Laura, Koivula, Anu
Published in Applied microbiology and biotechnology (01.12.2014)
Published in Applied microbiology and biotechnology (01.12.2014)
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Molecular basis of filamin A-FilGAP interaction and its impairment in congenital disorders associated with filamin A mutations
Nakamura, Fumihiko, Heikkinen, Outi, Pentikäinen, Olli T, Osborn, Teresia M, Kasza, Karen E, Weitz, David A, Kupiainen, Olga, Permi, Perttu, Kilpeläinen, Ilkka, Ylänne, Jari, Hartwig, John H, Stossel, Thomas P
Published in PloS one (18.03.2009)
Published in PloS one (18.03.2009)
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Cooperative symmetric to asymmetric conformational transition of the apo-form of scavenger decapping enzyme revealed by simulations
Pentikäinen, Ulla, Pentikäinen, Olli T., Mulholland, Adrian J.
Published in Proteins, structure, function, and bioinformatics (01.02.2008)
Published in Proteins, structure, function, and bioinformatics (01.02.2008)
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Journal Article
BODIL: a molecular modeling environment for structure-function analysis and drug design
Lehtonen, Jukka V, Still, Dan-Johan, Rantanen, Ville-V, Ekholm, Jan, Björklund, Dag, Iftikhar, Zuhair, Huhtala, Mikko, Repo, Susanna, Jussila, Antti, Jaakkola, Jussi, Pentikäinen, Olli, Nyrönen, Tommi, Salminen, Tiina, Gyllenberg, Mats, Johnson, Mark S
Published in Journal of computer-aided molecular design (01.06.2004)
Published in Journal of computer-aided molecular design (01.06.2004)
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Exploring kainate receptor pharmacology using molecular dynamics simulations
Postila, Pekka A., Swanson, Geoffrey T., Pentikäinen, Olli T.
Published in Neuropharmacology (01.02.2010)
Published in Neuropharmacology (01.02.2010)
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Journal Article
Pro-prion Binds Filamin A, Facilitating Its Interaction with Integrin b1, and Contributes to Melanomagenesis
Li, Chaoyang, Yu, Shuiliang, Nakamura, Fumihiko, Pentikaeinen, Olli T, Singh, Neena, Yin, Shaoman, Xin, Wei, Sy, Man-Sun
Published in The Journal of biological chemistry (24.09.2010)
Published in The Journal of biological chemistry (24.09.2010)
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Journal Article
Pharmacological activity of C10-substituted analogs of the high-affinity kainate receptor agonist dysiherbaine
Leanne Lash-Van Wyhe, L., Postila, Pekka A., Tsubone, Koichi, Sasaki, Makoto, Pentikäinen, Olli T., Sakai, Ryuichi, Swanson, Geoffrey T.
Published in Neuropharmacology (01.03.2010)
Published in Neuropharmacology (01.03.2010)
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Journal Article
Determination of Binding Site Residues Responsible for the Subunit Selectivity of Novel Marine-Derived Compounds on Kainate Receptors
Sanders, James M, Pentikäinen, Olli T, Settimo, Luca, Pentikäinen, Ulla, Shoji, Muneo, Sasaki, Makoto, Sakai, Ryuichi, Johnson, Mark S, Swanson, Geoffrey T
Published in Molecular pharmacology (01.06.2006)
Published in Molecular pharmacology (01.06.2006)
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Journal Article
UREA SUBSTITUTED SULPHONAMIDE DERIVATIVES
KOIVUNEN JARKKO TAPANI, MARJAMAEKI ANNE, PENTIKAEINEN OLLI TANELI, NISSINEN LIISA, KORHONEN JANI, PIHLAVISTO MARJO
Year of Publication 02.08.2012
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Year of Publication 02.08.2012
Patent
COLLAGEN RECEPTOR I-DOMAIN BINDING MODULATORS
JOHNSON, MARK, KAEPYLAE, JARMO, MARJAMAEKI, ANNE, NISSINEN, LIISA, OJALA, MARIKA, HEINO, JYRKI, NYROENEN, TOMMI, PENTIKAEINEN, OLLI
Year of Publication 27.05.2009
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Year of Publication 27.05.2009
Patent
SULPHONAMIDE DERIVATIVES
JOHNSON, MARK, KAEPYLAE, JARMO, MARJAMAEKI, ANNE, NISSINEN, LIISA, OJALA, MARIKA, PIHLAVISTO, MARJO, HEINO, JYRKI, NYROENEN, TOMMI, PENTIKAEINEN, OLLI
Year of Publication 21.07.2010
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Year of Publication 21.07.2010
Patent