p65 signaling dynamics drive the developmental progression of hematopoietic stem and progenitor cells through cell cycle regulation
Campbell, Clyde A, Calderon, Rodolfo, Pavani, Giulia, Cheng, Xiaoyi, Barakat, Radwa, Snella, Elizabeth, Liu, Fang, Peng, Xiyu, Essner, Jeffrey J, Dorman, Karin S, McGrail, Maura, Gadue, Paul, French, Deborah L, Espin-Palazon, Raquel
Published in Nature communications (06.09.2024)
Published in Nature communications (06.09.2024)
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Dietary Soluble and Insoluble Fiber With or Without Enzymes Altered the Intestinal Microbiota in Weaned Pigs Challenged With Enterotoxigenic E. coli F18
Li, Qingyun, Peng, Xiyu, Burrough, Eric R., Sahin, Orhan, Gould, Stacie A., Gabler, Nicholas K., Loving, Crystal L., Dorman, Karin S., Patience, John F.
Published in Frontiers in microbiology (27.05.2020)
Published in Frontiers in microbiology (27.05.2020)
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128 staRgate: a flexible density-based automated gating pipeline for complex high-dimensional flow cytometry data
Lee, Jasme, Adamow, Matthew, Maher, Colleen, Peng, Xiyu, Wong, Phillip, Ehrich, Fiona, Callahan, Margaret K, Shen, Ronglai, Panageas, Katherine S
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
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1303 Spatial topic modeling of tumor microenvironment with multiplexed imaging
Peng, Xiyu, Smithy, James W, Aleynick, Nathaniel, Zhuang, Mingqiang, Li, Yanyun, Lee, Jasme, Moy, Andrea P, Maher, Colleen, Ehrich, Fiona, Hollmann, Travis, Callahan, Margaret K, Panageas, Katherine S, Shen, Ronglai
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
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221 Digital assessment of stromal B cell aggregates as a biomarker of response to immune checkpoint inhibition in unresectable melanoma
Smithy, James W, Peng, Xiyu, Moy, Andrea P, Aleynick, Nathaniel, Zhuang, Mingqiang, Li, Yanyun, Maher, Colleen, Lee, Jasme, Ehrich, Fiona, Panageas, Katherine S, Shen, Ronglai, Hollmann, Travis, Callahan, Margaret K
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
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135 Integration of T-cell activation and tumor mutation burden predicts anti-PD-1 response
Ehrich, Fiona, Adamow, Matthew, Maher, Colleen, Lee, Jasme, Peng, Xiyu, Smithy, James W, Funt, Samuel A, Postow, Michael, Keegan, Niamh, Panageas, Katherine S, Shen, Ronglai, Callahan, Margaret K
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
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Integration of peripheral blood- and tissue-based biomarkers of response to immune checkpoint blockade in urothelial carcinoma
Vanguri, Rami S, Smithy, James W, Li, Yanyun, Zhuang, Mingqiang, Maher, Colleen A, Aleynick, Nathaniel, Peng, Xiyu, Al-Ahmadie, Hikmat, Funt, Samuel A, Rosenberg, Jonathan E, Iyer, Gopa, Bajorin, Dean, Mathews, James C, Nadeem, Saad, Panageas, Katherine S, Shen, Ronglai, Callahan, Margaret K, Hollmann, Travis J
Published in The Journal of pathology (01.11.2023)
Published in The Journal of pathology (01.11.2023)
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130 Young Scholar Presentation: Can exogenous carbohydrase supplementation to higher-fiber diets improve gut function, microbiota, and growth performance of weaned pigs?
Li, Qingyun, Gabler, Nicholas K, Burrough, Eric R, Loving, Crystal L, Schmitz-Esser, Stephan, Patience, John F, Peng, Xiyu
Published in Journal of animal science (29.07.2019)
Published in Journal of animal science (29.07.2019)
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Young Scholar Presentation: Can exogenous carbohydrase supplementation to higher-fiber diets improve gut function, microbiota, and growth performance of weaned pigs?
Li, Qingyun, Gabler, Nicholas K, Burrough, Eric R, Loving, Crystal L, Schmitz-Esser, Stephan, Patience, John F, Peng, Xiyu
Published in Journal of animal science (01.07.2019)
Published in Journal of animal science (01.07.2019)
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Fractional Amplitude of Low-Frequency Fluctuation and Voxel-Mirrored Homotopic Connectivity in Patients with Persistent Postural-Perceptual Dizziness: Resting-State Functional Magnetic Resonance Imaging Study
Liu, Yueji, Peng, Xiyu, Lin, Cunxin, Liu, Dan, Sun, Yang, Huang, Feiran, Liu, Tengfei, Xiao, Lijie, Wei, Xiue, Wang, Kai, Chen, Zhengwei, Rong, Liangqun
Published in Brain connectivity (01.06.2024)
Published in Brain connectivity (01.06.2024)
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A topic modeling approach reveals the dynamic T cell composition of peripheral blood during cancer immunotherapy
Peng, Xiyu, Lee, Jasme, Adamow, Matthew, Maher, Colleen, Postow, Michael A., Callahan, Margaret K., Panageas, Katherine S., Shen, Ronglai
Published in Cell reports methods (28.08.2023)
Published in Cell reports methods (28.08.2023)
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Uncovering the hidden structure of dynamic T cell composition in peripheral blood during cancer immunotherapy: a topic modeling approach
Peng, Xiyu, Lee, Jasme, Adamow, Matthew, Maher, Colleen, Postow, Michael A, Callahan, Margaret K, Panageas, Katherine S, Shen, Ronglai
Published in bioRxiv : the preprint server for biology (28.04.2023)
Published in bioRxiv : the preprint server for biology (28.04.2023)
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Spatial Immunophenotyping from Whole-Slide Multiplexed Tissue Imaging Using Convolutional Neural Networks
Yosofvand, Mohammad, Edmiston, Sharon N, Smithy, James W, Peng, Xiyu, Kostrzewa, Caroline E, Lin, Bridget, Ehrich, Fiona, Reiner, Allison, Miedema, Jayson, Moy, Andrea P, Orlow, Irene, Postow, Michael A, Panageas, Katherine, Seshan, Venkatraman E, Callahan, Margaret K, Thomas, Nancy E, Shen, Ronglai
Published in bioRxiv (19.08.2024)
Published in bioRxiv (19.08.2024)
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