A map of constrained coding regions in the human genome
Havrilla, James M., Pedersen, Brent S., Layer, Ryan M., Quinlan, Aaron R.
Published in Nature genetics (01.01.2019)
Published in Nature genetics (01.01.2019)
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GOATOOLS: A Python library for Gene Ontology analyses
Klopfenstein, D. V., Zhang, Liangsheng, Pedersen, Brent S., Ramírez, Fidel, Warwick Vesztrocy, Alex, Naldi, Aurélien, Mungall, Christopher J., Yunes, Jeffrey M., Botvinnik, Olga, Weigel, Mark, Dampier, Will, Dessimoz, Christophe, Flick, Patrick, Tang, Haibao
Published in Scientific reports (18.07.2018)
Published in Scientific reports (18.07.2018)
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GIGGLE: a search engine for large-scale integrated genome analysis
Layer, Ryan M, Pedersen, Brent S, DiSera, Tonya, Marth, Gabor T, Gertz, Jason, Quinlan, Aaron R
Published in Nature methods (01.02.2018)
Published in Nature methods (01.02.2018)
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Overlooked roles of DNA damage and maternal age in generating human germline mutations
Gao, Ziyue, Moorjani, Priya, Sasani, Thomas A., Pedersen, Brent S., Quinlan, Aaron R., Jorde, Lynn B., Amster, Guy, Przeworski, Molly
Published in Proceedings of the National Academy of Sciences - PNAS (07.05.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (07.05.2019)
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Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values
PEDERSEN, Brent S, SCHWARTZ, David A, YANG, Ivana V, KECHRIS, Katerina J
Published in Bioinformatics (15.11.2012)
Published in Bioinformatics (15.11.2012)
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Nanopore sequencing and assembly of a human genome with ultra-long reads
Jain, Miten, Koren, Sergey, Miga, Karen H, Quick, Josh, Rand, Arthur C, Sasani, Thomas A, Tyson, John R, Beggs, Andrew D, Dilthey, Alexander T, Fiddes, Ian T, Malla, Sunir, Marriott, Hannah, Nieto, Tom, O'Grady, Justin, Olsen, Hugh E, Pedersen, Brent S, Rhie, Arang, Richardson, Hollian, Quinlan, Aaron R, Snutch, Terrance P, Tee, Louise, Paten, Benedict, Phillippy, Adam M, Simpson, Jared T, Loman, Nicholas J, Loose, Matthew
Published in Nature biotechnology (01.04.2018)
Published in Nature biotechnology (01.04.2018)
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The nasal methylome and childhood atopic asthma
Yang, Ivana V., PhD, Pedersen, Brent S., PhD, Liu, Andrew H., MD, O'Connor, George T., MD, Pillai, Dinesh, MD, Kattan, Meyer, MD, Misiak, Rana Tawil, MD, Gruchalla, Rebecca, MD, Szefler, Stanley J., MD, Khurana Hershey, Gurjit K., MD, PhD, Kercsmar, Carolyn, MD, Richards, Adam, PhD, Stevens, Allen D., BA, Kolakowski, Christena A., MS, Makhija, Melanie, MD, Sorkness, Christine A., PharmD, Krouse, Rebecca Z., MS, Visness, Cynthia, PhD, Davidson, Elizabeth J., BA, Hennessy, Corinne E., BS, Martin, Richard J., MD, Togias, Alkis, MD, Busse, William W., MD, Schwartz, David A., MD
Published in Journal of allergy and clinical immunology (01.05.2017)
Published in Journal of allergy and clinical immunology (01.05.2017)
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DNA methylation and childhood asthma in the inner city
Yang, Ivana V., PhD, Pedersen, Brent S., PhD, Liu, Andrew, MD, O'Connor, George T., MD, Teach, Stephen J., MD, MPH, Kattan, Meyer, MD, Misiak, Rana Tawil, MD, Gruchalla, Rebecca, MD, Steinbach, Suzanne F., MD, Szefler, Stanley J., MD, Gill, Michelle A., MD, PhD, Calatroni, Agustin, MA, MS, David, Gloria, PhD, MHSc, Hennessy, Corinne E., BS, Davidson, Elizabeth J., BA, Zhang, Weiming, PhD, Gergen, Peter, MD, MPH, Togias, Alkis, MD, Busse, William W., MD, Schwartz, David A., MD
Published in Journal of allergy and clinical immunology (01.07.2015)
Published in Journal of allergy and clinical immunology (01.07.2015)
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Following Tetraploidy in Maize, a Short Deletion Mechanism Removed Genes Preferentially from One of the Two Homeologs
Woodhouse, Margaret R., Schnable, James C., Pedersen, Brent S., Lyons, Eric, Lisch, Damon, Subramaniam, Shabarinath, Freeling, Michael
Published in PLoS biology (01.06.2010)
Published in PLoS biology (01.06.2010)
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Samplot: a platform for structural variant visual validation and automated filtering
Belyeu, Jonathan R, Chowdhury, Murad, Brown, Joseph, Pedersen, Brent S, Cormier, Michael J, Quinlan, Aaron R, Layer, Ryan M
Published in Genome Biology (25.05.2021)
Published in Genome Biology (25.05.2021)
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CaBagE: A Cas9-based Background Elimination strategy for targeted, long-read DNA sequencing
Wallace, Amelia D, Sasani, Thomas A, Swanier, Jordan, Gates, Brooke L, Greenland, Jeff, Pedersen, Brent S, Varley, Katherine E, Quinlan, Aaron R
Published in PloS one (08.04.2021)
Published in PloS one (08.04.2021)
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