Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
Vandesompele, Jo, De Preter, Katleen, Pattyn, Filip, Poppe, Bruce, Van Roy, Nadine, De Paepe, Anne, Speleman, Frank
Published in Genome biology (18.06.2002)
Published in Genome biology (18.06.2002)
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Targeted expression of mutated ALK induces neuroblastoma in transgenic mice
Heukamp, Lukas C, Thor, Theresa, Schramm, Alexander, De Preter, Katleen, Kumps, Candy, De Wilde, Bram, Odersky, Andrea, Peifer, Martin, Lindner, Sven, Spruessel, Annika, Pattyn, Filip, Mestdagh, Pieter, Menten, Björn, Kuhfittig-Kulle, Steffi, Künkele, Annette, König, Katharina, Meder, Lydia, Chatterjee, Sampurna, Ullrich, Roland T, Schulte, Stefanie, Vandesompele, Jo, Speleman, Frank, Büttner, Reinhard, Eggert, Angelika, Schulte, Johannes H
Published in Science translational medicine (04.07.2012)
Published in Science translational medicine (04.07.2012)
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MYCN and HDAC2 cooperate to repress miR-183 signaling in neuroblastoma
Lodrini, Marco, Oehme, Ina, Schroeder, Christina, Milde, Till, Schier, Marie C, Kopp-Schneider, Annette, Schulte, Johannes H, Fischer, Matthias, De Preter, Katleen, Pattyn, Filip, Castoldi, Mirco, Muckenthaler, Martina U, Kulozik, Andreas E, Westermann, Frank, Witt, Olaf, Deubzer, Hedwig E
Published in Nucleic acids research (01.07.2013)
Published in Nucleic acids research (01.07.2013)
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Journal Article
High-throughput PCR assay design for targeted resequencing using primerXL
Lefever, Steve, Pattyn, Filip, De Wilde, Bram, Coppieters, Frauke, De Keulenaer, Sarah, Hellemans, Jan, Vandesompele, Jo
Published in BMC bioinformatics (06.09.2017)
Published in BMC bioinformatics (06.09.2017)
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An Ontology to Standardize Research Output of Nutritional Epidemiology: From Paper-Based Standards to Linked Content
Yang, Chen, Ambayo, Henry, Baets, Bernard De, Kolsteren, Patrick, Thanintorn, Nattapon, Hawwash, Dana, Bouwman, Jildau, Bronselaer, Antoon, Pattyn, Filip, Lachat, Carl
Published in Nutrients (08.06.2019)
Published in Nutrients (08.06.2019)
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Journal Article
The microRNA body map: dissecting microRNA function through integrative genomics
Mestdagh, Pieter, Lefever, Steve, Pattyn, Filip, Ridzon, Dana, Fredlund, Erik, Fieuw, Annelies, Ongenaert, Maté, Vermeulen, Joëlle, De Paepe, Anne, Wong, Linda, Speleman, Frank, Chen, Caifu, Vandesompele, Jo
Published in Nucleic acids research (01.11.2011)
Published in Nucleic acids research (01.11.2011)
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Journal Article
Dickkopf-3 is regulated by the MYCN-induced miR-17-92 cluster in neuroblastoma
De Brouwer, Sara, Mestdagh, Pieter, Lambertz, Irina, Pattyn, Filip, De Paepe, Anne, Westermann, Frank, Schroeder, Christina, Schulte, Johannes H., Schramm, Alexander, De Preter, Katleen, Vandesompele, Jo, Speleman, Frank
Published in International journal of cancer (01.06.2012)
Published in International journal of cancer (01.06.2012)
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Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening
D'haene, Barbara, Attanasio, Catia, Beysen, Diane, Dostie, Josée, Lemire, Edmond, Bouchard, Philippe, Field, Michael, Jones, Kristie, Lorenz, Birgit, Menten, Björn, Buysse, Karen, Pattyn, Filip, Friedli, Marc, Ucla, Catherine, Rossier, Colette, Wyss, Carine, Speleman, Frank, De Paepe, Anne, Dekker, Job, Antonarakis, Stylianos E, De Baere, Elfride
Published in PLoS genetics (01.06.2009)
Published in PLoS genetics (01.06.2009)
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Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform
De Keulenaer, Sarah, Hellemans, Jan, Lefever, Steve, Renard, Jean-Pierre, De Schrijver, Joachim, Van de Voorde, Hendrik, Tabatabaiefar, Mohammad Amin, Van Nieuwerburgh, Filip, Flamez, Daisy, Pattyn, Filip, Scharlaken, Bieke, Deforce, Dieter, Bekaert, Sofie, Van Criekinge, Wim, Vandesompele, Jo, Van Camp, Guy, Coucke, Paul
Published in BMC medical genomics (18.05.2012)
Published in BMC medical genomics (18.05.2012)
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Journal Article
Focal DNA copy number changes in neuroblastoma target MYCN regulated genes
Kumps, Candy, Fieuw, Annelies, Mestdagh, Pieter, Menten, Björn, Lefever, Steve, Pattyn, Filip, De Brouwer, Sara, Sante, Tom, Schulte, Johannes Hubertus, Schramm, Alexander, Van Roy, Nadine, Van Maerken, Tom, Noguera, Rosa, Combaret, Valérie, Devalck, Christine, Westermann, Frank, Laureys, Geneviève, Eggert, Angelika, Vandesompele, Jo, De Preter, Katleen, Speleman, Frank
Published in PloS one (04.01.2013)
Published in PloS one (04.01.2013)
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Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics
De Leeneer, Kim, De Schrijver, Joachim, Clement, Lieven, Baetens, Machteld, Lefever, Steve, De Keulenaer, Sarah, Van Criekinge, Wim, Deforce, Dieter, Van Nieuwerburgh, Filip, Bekaert, Sofie, Pattyn, Filip, De Wilde, Bram, Coucke, Paul, Vandesompele, Jo, Claes, Kathleen, Hellemans, Jan
Published in PloS one (30.09.2011)
Published in PloS one (30.09.2011)
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Identification of a novel recurrent 1q42.2-1qter deletion in high risk MYCN single copy 11q deleted neuroblastomas
Fieuw, Annelies, Kumps, Candy, Schramm, Alexander, Pattyn, Filip, Menten, Björn, Antonacci, Francesca, Sudmant, Peter, Schulte, Johannes H., Van Roy, N, Vergult, Sarah, Buckley, Patrick G., De Paepe, A, Noguera, Rosa, Versteeg, Rogier, Stallings, Raymond, Eggert, Angelika, Vandesompele, Jo, De Preter, K, Speleman, Frank
Published in International journal of cancer (01.06.2012)
Published in International journal of cancer (01.06.2012)
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Meta-mining of Neuroblastoma and Neuroblast Gene Expression Profiles Reveals Candidate Therapeutic Compounds
DE PRETER, Katleen, DE BROUWER, Sara, VAN MAERKEN, Tom, PATTYN, Filip, SCHRAMM, Alexander, EGGERT, Angelika, VANDESOMPELE, Jo, SPELEMAN, Frank
Published in Clinical cancer research (01.06.2009)
Published in Clinical cancer research (01.06.2009)
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Journal Article
Effective Alu repeat based RT-Qpcr normalization in cancer cell perturbation experiments
Rihani, Ali, Van Maerken, Tom, Pattyn, Filip, Van Peer, Gert, Beckers, Anneleen, De Brouwer, Sara, Kumps, Candy, Mets, Evelien, Van der Meulen, Joni, Rondou, Pieter, Leonelli, Carina, Mestdagh, Pieter, Speleman, Frank, Vandesompele, Jo
Published in PloS one (14.08.2013)
Published in PloS one (14.08.2013)
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Journal Article
Aberrant methylation of candidate tumor suppressor genes in neuroblastoma
Hoebeeck, Jasmien, Michels, Evi, Pattyn, Filip, Combaret, Valérie, Vermeulen, Joëlle, Yigit, Nurten, Hoyoux, Claire, Laureys, Geneviève, Paepe, Anne De, Speleman, Frank, Vandesompele, Jo
Published in Cancer letters (18.01.2009)
Published in Cancer letters (18.01.2009)
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Journal Article
methBLAST and methPrimerDB: web-tools for PCR based methylation analysis
Pattyn, Filip, Hoebeeck, Jasmien, Robbrecht, Piet, Michels, Evi, De Paepe, Anne, Bottu, Guy, Coornaert, David, Herzog, Robert, Speleman, Frank, Vandesompele, Jo
Published in BMC bioinformatics (09.11.2006)
Published in BMC bioinformatics (09.11.2006)
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Journal Article
arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays
Menten, Björn, Pattyn, Filip, De Preter, Katleen, Robbrecht, Piet, Michels, Evi, Buysse, Karen, Mortier, Geert, De Paepe, Anne, van Vooren, Steven, Vermeesch, Joris, Moreau, Yves, De Moor, Bart, Vermeulen, Stefan, Speleman, Frank, Vandesompele, Jo
Published in BMC bioinformatics (23.05.2005)
Published in BMC bioinformatics (23.05.2005)
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Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline
De Schrijver, Joachim M, De Leeneer, Kim, Lefever, Steve, Sabbe, Nick, Pattyn, Filip, Van Nieuwerburgh, Filip, Coucke, Paul, Deforce, Dieter, Vandesompele, Jo, Bekaert, Sofie, Hellemans, Jan, Van Criekinge, Wim
Published in BMC bioinformatics (20.05.2010)
Published in BMC bioinformatics (20.05.2010)
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