RBPsuite: RNA-protein binding sites prediction suite based on deep learning
Pan, Xiaoyong, Fang, Yi, Li, Xianfeng, Yang, Yang, Shen, Hong-Bin
Published in BMC genomics (09.12.2020)
Published in BMC genomics (09.12.2020)
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Journal Article
DG-Affinity: predicting antigen–antibody affinity with language models from sequences
Yuan, Ye, Chen, Qushuo, Mao, Jun, Li, Guipeng, Pan, Xiaoyong
Published in BMC bioinformatics (13.11.2023)
Published in BMC bioinformatics (13.11.2023)
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Journal Article
Lentiviral delivery of co-packaged Cas9 mRNA and a Vegfa-targeting guide RNA prevents wet age-related macular degeneration in mice
Ling, Sikai, Yang, Shiqi, Hu, Xinde, Yin, Di, Dai, Yao, Qian, Xiaoqing, Wang, Dawei, Pan, Xiaoyong, Hong, Jiaxu, Sun, Xiaodong, Yang, Hui, Paludan, Soren Riis, Cai, Yujia
Published in Nature biomedical engineering (01.02.2021)
Published in Nature biomedical engineering (01.02.2021)
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Journal Article
TFvelo: gene regulation inspired RNA velocity estimation
Li, Jiachen, Pan, Xiaoyong, Yuan, Ye, Shen, Hong-Bin
Published in Nature communications (15.02.2024)
Published in Nature communications (15.02.2024)
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Journal Article
ZeroBind: a protein-specific zero-shot predictor with subgraph matching for drug-target interactions
Wang, Yuxuan, Xia, Ying, Yan, Junchi, Yuan, Ye, Shen, Hong-Bin, Pan, Xiaoyong
Published in Nature communications (29.11.2023)
Published in Nature communications (29.11.2023)
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Journal Article
Recent methodology progress of deep learning for RNA-protein interaction prediction
Pan, Xiaoyong, Yang, Yang, Xia, Chun-Qiu, Mirza, Aashiq H, Shen, Hong-Bin
Published in Wiley interdisciplinary reviews. RNA (01.11.2019)
Published in Wiley interdisciplinary reviews. RNA (01.11.2019)
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Journal Article
Identification of Protein Subcellular Localization With Network and Functional Embeddings
Pan, Xiaoyong, Li, Hao, Zeng, Tao, Li, Zhandong, Chen, Lei, Huang, Tao, Cai, Yu-Dong
Published in Frontiers in genetics (20.01.2021)
Published in Frontiers in genetics (20.01.2021)
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Journal Article
Identifying Methylation Pattern and Genes Associated with Breast Cancer Subtypes
Chen, Lei, Zeng, Tao, Pan, Xiaoyong, Zhang, Yu-Hang, Huang, Tao, Cai, Yu-Dong
Published in International journal of molecular sciences (31.08.2019)
Published in International journal of molecular sciences (31.08.2019)
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Journal Article
Tissue Expression Difference between mRNAs and lncRNAs
Chen, Lei, Zhang, Yu-Hang, Pan, Xiaoyong, Liu, Min, Wang, Shaopeng, Huang, Tao, Cai, Yu-Dong
Published in International journal of molecular sciences (31.10.2018)
Published in International journal of molecular sciences (31.10.2018)
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Journal Article
Experimental investigation of frost and defrost performance of microchannel heat exchangers for heat pump systems
Xu, Bo, Han, Qing, Chen, Jiangping, Li, Feng, Wang, Nianjie, Li, Dong, Pan, Xiaoyong
Published in Applied energy (01.03.2013)
Published in Applied energy (01.03.2013)
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Journal Article
Identifying Functions of Proteins in Mice With Functional Embedding Features
Li, Hao, Zhang, ShiQi, Chen, Lei, Pan, Xiaoyong, Li, ZhanDong, Huang, Tao, Cai, Yu-Dong
Published in Frontiers in genetics (16.05.2022)
Published in Frontiers in genetics (16.05.2022)
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Journal Article
Distinguishing Glioblastoma Subtypes by Methylation Signatures
Zhang, Yu-Hang, Li, Zhandong, Zeng, Tao, Pan, Xiaoyong, Chen, Lei, Liu, Dejing, Li, Hao, Huang, Tao, Cai, Yu-Dong
Published in Frontiers in genetics (24.11.2020)
Published in Frontiers in genetics (24.11.2020)
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Journal Article