PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks
Berbel Caban, Ana, Pak, Theodore R, Obla, Ajay, Dupper, Amy C, Chacko, Kieran I, Fox, Lindsey, Mills, Alexandra, Ciferri, Brianne, Oussenko, Irina, Beckford, Colleen, Chung, Marilyn, Sebra, Robert, Smith, Melissa, Conolly, Sarah, Patel, Gopi, Kasarskis, Andrew, Sullivan, Mitchell J, Altman, Deena R, van Bakel, Harm
Published in Genome medicine (16.11.2020)
Published in Genome medicine (16.11.2020)
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Journal Article
Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases
Michlmayr, Daniela, Pak, Theodore R, Rahman, Adeeb H, Amir, El‐Ad David, Kim, Eun‐Young, Kim‐Schulze, Seunghee, Suprun, Maria, Stewart, Michael G, Thomas, Guajira P, Balmaseda, Angel, Wang, Li, Zhu, Jun, Suaréz‐Fariñas, Mayte, Wolinsky, Steven M, Kasarskis, Andrew, Harris, Eva
Published in Molecular systems biology (01.08.2018)
Published in Molecular systems biology (01.08.2018)
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Journal Article
Risk of Misleading Conclusions in Observational Studies of Time-to-Antibiotics and Mortality in Suspected Sepsis
Pak, Theodore R, Young, Jessica, McKenna, Caroline S, Agan, Anna, DelloStritto, Laura, Filbin, Michael R, Dutta, Sayon, Kadri, Sameer S, Septimus, Edward J, Rhee, Chanu, Klompas, Michael
Published in Clinical infectious diseases (30.11.2023)
Published in Clinical infectious diseases (30.11.2023)
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Journal Article
Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins
Rozenblatt-Rosen, Orit, Deo, Rahul C., Padi, Megha, Adelmant, Guillaume, Calderwood, Michael A., Rolland, Thomas, Grace, Miranda, Dricot, Amélie, Askenazi, Manor, Tavares, Maria, Pevzner, Samuel J., Abderazzaq, Fieda, Byrdsong, Danielle, Carvunis, Anne-Ruxandra, Chen, Alyce A., Cheng, Jingwei, Correll, Mick, Duarte, Melissa, Fan, Changyu, Feltkamp, Mariet C., Ficarro, Scott B., Franchi, Rachel, Garg, Brijesh K., Gulbahce, Natali, Hao, Tong, Holthaus, Amy M., James, Robert, Korkhin, Anna, Litovchick, Larisa, Mar, Jessica C., Pak, Theodore R., Rabello, Sabrina, Rubio, Renee, Shen, Yun, Singh, Saurav, Spangle, Jennifer M., Tasan, Murat, Wanamaker, Shelly, Webber, James T., Roecklein-Canfield, Jennifer, Johannsen, Eric, Barabási, Albert-László, Beroukhim, Rameen, Kieff, Elliott, Cusick, Michael E., Hill, David E., Münger, Karl, Marto, Jarrod A., Quackenbush, John, Roth, Frederick P., DeCaprio, James A., Vidal, Marc
Published in Nature (London) (26.07.2012)
Published in Nature (London) (26.07.2012)
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Journal Article
Genome Plasticity of agr -Defective Staphylococcus aureus during Clinical Infection
Altman, Deena R, Sullivan, Mitchell J, Chacko, Kieran I, Balasubramanian, Divya, Pak, Theodore R, Sause, William E, Kumar, Krishan, Sebra, Robert, Deikus, Gintaras, Attie, Oliver, Rose, Hannah, Lewis, Martha, Fulmer, Yi, Bashir, Ali, Kasarskis, Andrew, Schadt, Eric E, Richardson, Anthony R, Torres, Victor J, Shopsin, Bo, van Bakel, Harm
Published in Infection and immunity (01.10.2018)
Published in Infection and immunity (01.10.2018)
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Journal Article
Genetic Basis of Emerging Vancomycin, Linezolid, and Daptomycin Heteroresistance in a Case of Persistent Enterococcus faecium Bacteremia
Chacko, Kieran I, Sullivan, Mitchell J, Beckford, Colleen, Altman, Deena R, Ciferri, Brianne, Pak, Theodore R, Sebra, Robert, Kasarskis, Andrew, Hamula, Camille L, van Bakel, Harm
Published in Antimicrobial agents and chemotherapy (01.04.2018)
Published in Antimicrobial agents and chemotherapy (01.04.2018)
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Journal Article
A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak
Sullivan, Mitchell J, Altman, Deena R, Chacko, Kieran I, Ciferri, Brianne, Webster, Elizabeth, Pak, Theodore R, Deikus, Gintaras, Lewis-Sandari, Martha, Khan, Zenab, Beckford, Colleen, Rendo, Angela, Samaroo, Flora, Sebra, Robert, Karam-Howlin, Ramona, Dingle, Tanis, Hamula, Camille, Bashir, Ali, Schadt, Eric, Patel, Gopi, Wallach, Frances, Kasarskis, Andrew, Gibbs, Kathleen, van Bakel, Harm
Published in Journal of clinical microbiology (01.12.2019)
Published in Journal of clinical microbiology (01.12.2019)
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Journal Article
Real-Time Investigation of a Large Nosocomial Influenza A Outbreak Informed by Genomic Epidemiology
Javaid, Waleed, Ehni, Jordan, Gonzalez-Reiche, Ana S, Carreño, Juan Manuel, Hirsch, Elena, Tan, Jessica, Khan, Zenab, Kriti, Divya, Ly, Thanh, Kranitzky, Bethany, Barnett, Barbara, Cera, Freddy, Prespa, Lenny, Moss, Marie, Albrecht, Randy A, Mustafa, Ala, Herbison, Ilka, Hernandez, Matthew M, Pak, Theodore R, Alshammary, Hala A, Sebra, Robert, Smith, Melissa L, Krammer, Florian, Gitman, Melissa R, Sordillo, Emilia Mia, Simon, Viviana, van Bakel, Harm
Published in Clinical infectious diseases (06.12.2021)
Published in Clinical infectious diseases (06.12.2021)
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Journal Article
Estimating Local Costs Associated With Clostridium difficile Infection Using Machine Learning and Electronic Medical Records
Pak, Theodore R, Chacko, Kieran I, O'Donnell, Timothy, Huprikar, Shirish S, van Bakel, Harm, Kasarskis, Andrew, Scott, Erick R
Published in Infection control and hospital epidemiology (01.12.2017)
Published in Infection control and hospital epidemiology (01.12.2017)
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Journal Article
Whole-genome sequencing identifies emergence of a quinolone resistance mutation in a case of Stenotrophomonas maltophilia bacteremia
Pak, Theodore R, Altman, Deena R, Attie, Oliver, Sebra, Robert, Hamula, Camille L, Lewis, Martha, Deikus, Gintaras, Newman, Leah C, Fang, Gang, Hand, Jonathan, Patel, Gopi, Wallach, Fran, Schadt, Eric E, Huprikar, Shirish, van Bakel, Harm, Kasarskis, Andrew, Bashir, Ali
Published in Antimicrobial agents and chemotherapy (01.11.2015)
Published in Antimicrobial agents and chemotherapy (01.11.2015)
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Journal Article
High-dimensional CyTOF analysis of dengue virus-infected human DCs reveals distinct viral signatures
Hamlin, Rebecca E, Rahman, Adeeb, Pak, Theodore R, Maringer, Kevin, Mena, Ignacio, Bernal-Rubio, Dabeiba, Potla, Uma, Maestre, Ana M, Fredericks, Anthony C, Amir, El-Ad D, Kasarskis, Andrew, Ramos, Irene, Merad, Miriam, Fernandez-Sesma, Ana
Published in JCI insight (06.07.2017)
Published in JCI insight (06.07.2017)
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Journal Article
Assessment of Racial, Ethnic, and Sex-Based Disparities in Time-to-Antibiotics and Sepsis Outcomes in a Large Multihospital Cohort
Pak, Theodore R, Sánchez, Sarimer M, McKenna, Caroline S, Rhee, Chanu, Klompas, Michael
Published in Critical care medicine (16.09.2024)
Published in Critical care medicine (16.09.2024)
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Journal Article
1014. Assessment of racial, ethnic, and sex-based disparities in time-to-antibiotics and sepsis outcomes in a large multi-hospital cohort
Pak, Theodore R, Sanchez, Sarimer, McKenna, Caroline S, Rhee, Chanu, Klompas, Michael
Published in Open forum infectious diseases (27.11.2023)
Published in Open forum infectious diseases (27.11.2023)
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Journal Article