Predicting the frequencies of drug side effects
Galeano, Diego, Li, Shantao, Gerstein, Mark, Paccanaro, Alberto
Published in Nature communications (11.09.2020)
Published in Nature communications (11.09.2020)
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Journal Article
SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale
Nepusz, Tamás, Sasidharan, Rajkumar, Paccanaro, Alberto
Published in BMC bioinformatics (09.03.2010)
Published in BMC bioinformatics (09.03.2010)
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Journal Article
Protein function prediction for newly sequenced organisms
Torres, Mateo, Yang, Haixuan, Romero, Alfonso E., Paccanaro, Alberto
Published in Nature machine intelligence (01.12.2021)
Published in Nature machine intelligence (01.12.2021)
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Journal Article
The corrected gene proximity map for analyzing the 3D genome organization using Hi-C data
Ye, Cheng, Paccanaro, Alberto, Gerstein, Mark, Yan, Koon-Kiu
Published in BMC bioinformatics (29.05.2020)
Published in BMC bioinformatics (29.05.2020)
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Journal Article
Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins
Hu, Pingzhao, Janga, Sarath Chandra, Babu, Mohan, Díaz-Mejía, J Javier, Butland, Gareth, Yang, Wenhong, Pogoutse, Oxana, Guo, Xinghua, Phanse, Sadhna, Wong, Peter, Chandran, Shamanta, Christopoulos, Constantine, Nazarians-Armavil, Anaies, Nasseri, Negin Karimi, Musso, Gabriel, Ali, Mehrab, Nazemof, Nazila, Eroukova, Veronika, Golshani, Ashkan, Paccanaro, Alberto, Greenblatt, Jack F, Moreno-Hagelsieb, Gabriel, Emili, Andrew
Published in PLoS biology (28.04.2009)
Published in PLoS biology (28.04.2009)
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Journal Article
Predicting interactions in protein networks by completing defective cliques
Yu, Haiyuan, Paccanaro, Alberto, Trifonov, Valery, Gerstein, Mark
Published in Bioinformatics (01.04.2006)
Published in Bioinformatics (01.04.2006)
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Journal Article
Author Correction: Subclonal mutation selection in mouse lymphomagenesis identifies known cancer loci and suggests novel candidates
Webster, Philip, Dawes, Joanna C, Dewchand, Hamlata, Takacs, Katalin, Iadarola, Barbara, Bolt, Bruce J, Caceres, Juan J, Kaczor, Jakub, Dharmalingam, Gopuraja, Dore, Marian, Game, Laurence, Adejumo, Thomas, Elliott, James, Naresh, Kikkeri, Karimi, Mohammad, Rekopoulou, Katerina, Tan, Ge, Paccanaro, Alberto, Uren, Anthony G
Published in Nature communications (06.03.2019)
Published in Nature communications (06.03.2019)
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Journal Article
Quantifying environmental adaptation of metabolic pathways in metagenomics
Gianoulis, Tara A, Raes, Jeroen, Patel, Prianka V, Bjornson, Robert, Korbel, Jan O, Letunic, Ivica, Yamada, Takuji, Paccanaro, Alberto, Jensen, Lars J, Snyder, Michael, Bork, Peer, Gerstein, Mark B
Published in Proceedings of the National Academy of Sciences - PNAS (03.02.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (03.02.2009)
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Journal Article
Clustering of Pseudomonas aeruginosa transcriptomes from planktonic cultures, developing and mature biofilms reveals distinct expression profiles
Waite, Richard D, Paccanaro, Alberto, Papakonstantinopoulou, Anastasia, Hurst, Jacob M, Saqi, Mansoor, Littler, Eddie, Curtis, Michael A
Published in BMC genomics (26.06.2006)
Published in BMC genomics (26.06.2006)
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Journal Article
Assessing the limits of genomic data integration for predicting protein networks
Lu, Long J, Xia, Yu, Paccanaro, Alberto, Yu, Haiyuan, Gerstein, Mark
Published in Genome research (01.07.2005)
Published in Genome research (01.07.2005)
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Journal Article
OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast
ABBRUSCATO, PAMELA, NEPUSZ, TAMÁS, MIZZI, LUCA, DEL CORVO, MARCELLO, MORANDINI, PIERO, FUMASONI, IRENE, MICHEL, CORINNE, PACCANARO, ALBERTO, GUIDERDONI, EMMANUEL, SCHAFFRATH, ULRICH, MOREL, JEAN-BENOÎT, PIFFANELLI, PIETRO, FAIVRE-RAMPANT, ODILE
Published in Molecular plant pathology (01.10.2012)
Published in Molecular plant pathology (01.10.2012)
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Journal Article
Subclonal mutation selection in mouse lymphomagenesis identifies known cancer loci and suggests novel candidates
Webster, Philip, Dawes, Joanna C, Dewchand, Hamlata, Takacs, Katalin, Iadarola, Barbara, Bolt, Bruce J, Caceres, Juan J, Kaczor, Jakub, Dharmalingam, Gopuraja, Dore, Marian, Game, Laurence, Adejumo, Thomas, Elliott, James, Naresh, Kikkeri, Karimi, Mohammad, Rekopoulou, Katerina, Tan, Ge, Paccanaro, Alberto, Uren, Anthony G
Published in Nature communications (09.07.2018)
Published in Nature communications (09.07.2018)
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Journal Article
Computational selection of transcriptomics experiments improves Guilt-by-Association analyses
Bhat, Prajwal, Yang, Haixuan, Bögre, László, Devoto, Alessandra, Paccanaro, Alberto
Published in PloS one (07.08.2012)
Published in PloS one (07.08.2012)
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Journal Article
LUMI-PCR: an Illumina platform ligation-mediated PCR protocol for integration site cloning, provides molecular quantitation of integration sites
Dawes, Joanna C, Webster, Philip, Iadarola, Barbara, Garcia-Diaz, Claudia, Dore, Marian, Bolt, Bruce J, Dewchand, Hamlata, Dharmalingam, Gopuraja, McLatchie, Alex P, Kaczor, Jakub, Caceres, Juan J, Paccanaro, Alberto, Game, Laurence, Parrinello, Simona, Uren, Anthony G
Published in Mobile DNA (04.02.2020)
Published in Mobile DNA (04.02.2020)
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Journal Article
Integration of curated databases to identify genotype-phenotype associations
Goh, Chern-Sing, Gianoulis, Tara A, Liu, Yang, Li, Jianrong, Paccanaro, Alberto, Lussier, Yves A, Gerstein, Mark
Published in BMC genomics (12.10.2006)
Published in BMC genomics (12.10.2006)
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Journal Article
LanDis: the disease landscape explorer
Caniza, Horacio, Cáceres, Juan J, Torres, Mateo, Paccanaro, Alberto
Published in European journal of human genetics : EJHG (01.04.2024)
Published in European journal of human genetics : EJHG (01.04.2024)
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Journal Article