Biocomputational prediction of small non-coding RNAs in Streptomyces
Pánek, Josef, Bobek, Jan, Mikulík, Karel, Basler, Marek, Vohradský, Jirí
Published in BMC genomics (13.05.2008)
Published in BMC genomics (13.05.2008)
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rboAnalyzer webserver: web service for non-coding RNA characterization from NCBI BLAST output
Schwarz, Marek, Vohradský, Jiří, Pánek, Josef
Published in Bioinformatics (Oxford, England) (09.09.2021)
Published in Bioinformatics (Oxford, England) (09.09.2021)
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Journal Article
The SMN complex drives structural changes in human snRNAs to enable snRNP assembly
Pánek, Josef, Roithová, Adriana, Radivojević, Nenad, Sýkora, Michal, Prusty, Archana Bairavasundaram, Huston, Nicholas, Wan, Han, Pyle, Anna Marie, Fischer, Utz, Staněk, David
Published in Nature communications (18.10.2023)
Published in Nature communications (18.10.2023)
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Journal Article
The Sm-core mediates the retention of partially-assembled spliceosomal snRNPs in Cajal bodies until their full maturation
Roithová, Adriana, Klimešová, Klára, Pánek, Josef, Will, Cindy L, Lührmann, Reinhard, Staněk, David, Girard, Cyrille
Published in Nucleic acids research (20.04.2018)
Published in Nucleic acids research (20.04.2018)
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Journal Article
Does eIF3 promote reinitiation after translation of short upstream ORFs also in mammalian cells?
Hronová, Vladislava, Mohammad, Mahabub Pasha, Wagner, Susan, Pánek, Josef, Gunišová, Stanislava, Zeman, Jakub, Poncová, Kristýna, Valášek, Leoš Shivaya
Published in RNA biology (02.12.2017)
Published in RNA biology (02.12.2017)
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Journal Article
rboAnalyzer: A Software to Improve Characterization of Non-coding RNAs From Sequence Database Search Output
Schwarz, Marek, Vohradský, Jiří, Modrák, Martin, Pánek, Josef
Published in Frontiers in genetics (28.07.2020)
Published in Frontiers in genetics (28.07.2020)
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Journal Article
Ms1 RNA Interacts With the RNA Polymerase Core in Streptomyces coelicolor and Was Identified in Majority of Actinobacteria Using a Linguistic Gene Synteny Search
Vaňková Hausnerová, Viola, Marvalová, Olga, Šiková, Michaela, Shoman, Mahmoud, Havelková, Jarmila, Kambová, Milada, Janoušková, Martina, Kumar, Dilip, Halada, Petr, Schwarz, Marek, Krásný, Libor, Hnilicová, Jarmila, Pánek, Josef
Published in Frontiers in microbiology (11.05.2022)
Published in Frontiers in microbiology (11.05.2022)
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Journal Article
Translation reinitiation relies on the interaction between eIF3a/TIF32 and progressively folded cis-acting mRNA elements preceding short uORFs
Munzarová, Vanda, Pánek, Josef, Gunišová, Stanislava, Dányi, István, Szamecz, Béla, Valášek, Leoš Shivaya
Published in PLoS genetics (01.07.2011)
Published in PLoS genetics (01.07.2011)
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A systematic computational analysis of the rRNA-3' UTR sequence complementarity suggests a regulatory mechanism influencing post-termination events in metazoan translation
Panek, Josef, Kolar, Michal, Herrmannova, Anna, Valasek, Leos Shivaya
Published in RNA (Cambridge) (01.07.2016)
Published in RNA (Cambridge) (01.07.2016)
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Journal Article
Ms1, a novel sRNA interacting with the RNA polymerase core in mycobacteria
Hnilicová, Jarmila, Jirát Matějčková, Jitka, Šiková, Michaela, Pospíšil, Jiří, Halada, Petr, Pánek, Josef, Krásný, Libor
Published in Nucleic acids research (13.10.2014)
Published in Nucleic acids research (13.10.2014)
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Journal Article
rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots
Jelínek, Jan, Hoksza, David, Hajič, Jan, Pešek, Jan, Drozen, Jan, Hladík, Tomáš, Klimpera, Michal, Vohradský, Jiří, Pánek, Josef
Published in Database : the journal of biological databases and curation (2019)
Published in Database : the journal of biological databases and curation (2019)
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Testing gold nanostructures fabricated by hole-mask colloidal lithography as potential substrates for SERS sensors: sensitivity, signal variability, and the aspect of adsorbate depositionElectronic supplementary information (ESI) available: Schematic representation of fabrication of the Au nanostructures, details and results of additional mapping of the SERS signal, details of computer simulation, and the fit of measured RSD values for different objectives. See DOI: 10.1039/c6cp02752k
Peksa, Vlastimil, Lebrušková, Petra, Šípová, Hana, Št pánek, Josef, Bok, Ji í, Homola, Ji í, Procházka, Marek
Year of Publication 20.07.2016
Year of Publication 20.07.2016
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Journal Article
Translation Reinitiation Relies on the Interaction between eIF3a/TIF32 and Progressively Folded cis-Acting mRNA Elements Preceding Short uORFs: e1002137
Munzarová, Vanda, Pánek, Josef, Gunisová, Stanislava, Dányi, István, Szamecz, Béla, Valásek, Leos Shivaya
Published in PLoS genetics (01.07.2011)
Published in PLoS genetics (01.07.2011)
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