A method for selectively enriching microbial DNA from contaminating vertebrate host DNA
Feehery, George R, Yigit, Erbay, Oyola, Samuel O, Langhorst, Bradley W, Schmidt, Victor T, Stewart, Fiona J, Dimalanta, Eileen T, Amaral-Zettler, Linda A, Davis, Theodore, Quail, Michael A, Pradhan, Sriharsa
Published in PloS one (28.10.2013)
Published in PloS one (28.10.2013)
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Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes
Oyola, Samuel O, Otto, Thomas D, Gu, Yong, Maslen, Gareth, Manske, Magnus, Campino, Susana, Turner, Daniel J, Macinnis, Bronwyn, Kwiatkowski, Dominic P, Swerdlow, Harold P, Quail, Michael A
Published in BMC genomics (03.01.2012)
Published in BMC genomics (03.01.2012)
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Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment
Juma, John, Fonseca, Vagner, Konongoi, Samson L, van Heusden, Peter, Roesel, Kristina, Sang, Rosemary, Bett, Bernard, Christoffels, Alan, de Oliveira, Tulio, Oyola, Samuel O
Published in BMC genomics (18.07.2022)
Published in BMC genomics (18.07.2022)
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Genome characterization of Rift Valley fever virus isolated from cattle, goats and sheep during interepidemic periods in Kenya
Onwongá, Amos A, Oyola, Samuel O, Juma, John, Konongoi, Samson, Nyamota, Richard, Mwangi, Reuben, Muli, Collins, Dobi, Paul, Bett, Bernard B, Ongus, Juliette R
Published in BMC veterinary research (23.08.2024)
Published in BMC veterinary research (23.08.2024)
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Genomic Epidemiology of Rift Valley Fever Virus Involved in the 2018 and 2022 Outbreaks in Livestock in Rwanda
Nsengimana, Isidore, Juma, John, Roesel, Kristina, Gasana, Methode N, Ndayisenga, Fabrice, Muvunyi, Claude M, Hakizimana, Emmanuel, Hakizimana, Jean N, Eastwood, Gillian, Chengula, Augustino A, Bett, Bernard, Kasanga, Christopher J, Oyola, Samuel O
Published in Viruses (01.07.2024)
Published in Viruses (01.07.2024)
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Whole-genome sequencing of SARS-CoV-2 reveals diverse mutations in circulating Alpha and Delta variants during the first, second, and third waves of COVID-19 in South Kivu, east of the Democratic Republic of the Congo
Ntagereka, Patrick Bisimwa, Oyola, Samuel O., Baenyi, Simon Patrick, Rono, Gilbert Kibet, Birindwa, Ahadi Bwihangane, Shukuru, Dieudonné Wasso, Baharanyi, Tshass Chasinga, Kashosi, Théophile Mitima, Buhendwa, Jean-Paul Cikwanine, Bisimwa, Parvine Basimane, Kusinza, Aline Byabene, Basengere, Rodrigue Ayagirwe, Mukwege, Denis
Published in International journal of infectious diseases (01.09.2022)
Published in International journal of infectious diseases (01.09.2022)
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Altitude-dependent agro-ecologies impact the microbiome diversity of scavenging indigenous chicken in Ethiopia
Glendinning, Laura, Jia, Xinzheng, Kebede, Adebabay, Oyola, Samuel O, Park, Jong-Eun, Park, Woncheoul, Assiri, Abdulwahab, Holm, Jacob Bak, Kristiansen, Karsten, Han, Jianlin, Hanotte, Olivier
Published in Microbiome (23.07.2024)
Published in Microbiome (23.07.2024)
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Rapid CRISPR/Cas9 Editing of Genotype IX African Swine Fever Virus Circulating in Eastern and Central Africa
Abkallo, Hussein M., Svitek, Nicholas, Oduor, Bernard, Awino, Elias, Henson, Sonal P., Oyola, Samuel O., Mwalimu, Stephen, Assad-Garcia, Nacrya, Fuchs, Walter, Vashee, Sanjay, Steinaa, Lucilla
Published in Frontiers in genetics (30.08.2021)
Published in Frontiers in genetics (30.08.2021)
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Complete Genome Sequencing and Comparative Phylogenomics of Nine African Swine Fever Virus (ASFV) Isolates of the Virulent East African p72 Genotype IX without Viral Sequence Enrichment
Domelevo Entfellner, Jean-Baka, Okoth, Edward Abworo, Onzere, Cynthia Kavulani, Upton, Chris, Njau, Emma Peter, Höper, Dirk, Henson, Sonal P, Oyola, Samuel O, Bochere, Edwina, Machuka, Eunice M, Bishop, Richard P
Published in Viruses (01.09.2024)
Published in Viruses (01.09.2024)
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Metagenomic Characterization of Poultry Cloacal and Oropharyngeal Swabs in Kenya Reveals Bacterial Pathogens and Their Antimicrobial Resistance Genes
Panyako, Philip M., Ommeh, Sheila C., Kuria, Stephen N., Lichoti, Jacqueline K., Musina, Johns, Nair, Venugopal, Nene, Vish, Munir, Muhammad, Oyola, Samuel O.
Published in International journal of microbiology (12.02.2024)
Published in International journal of microbiology (12.02.2024)
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Journal Article
Efficient Depletion of Host DNA Contamination in Malaria Clinical Sequencing
Oyola, Samuel O, Gu, Yong, Manske, Magnus, Otto, Thomas D, O'Brien, John, Alcock, Daniel, Macinnis, Bronwyn, Berriman, Matthew, Newbold, Chris I, Kwiatkowski, Dominic P, Swerdlow, Harold P, Quail, Michael A
Published in Journal of Clinical Microbiology (01.03.2013)
Published in Journal of Clinical Microbiology (01.03.2013)
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Using Multiplex Amplicon PCR Technology to Efficiently and Timely Generate Rift Valley Fever Virus Sequence Data for Genomic Surveillance
Juma, John, Konongoi, Samson L, Nsengimana, Isidore, Mwangi, Reuben, Akoko, James, Nyamota, Richard, Muli, Collins, Dobi, Paul O, Kiritu, Edward, Osiany, Shebbar, Onwong'a, Amos A, Gachogo, Rachael W, Sang, Rosemary, Christoffels, Alan, Roesel, Kristina, Bett, Bernard, Oyola, Samuel O
Published in Viruses (09.02.2023)
Published in Viruses (09.02.2023)
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Genome-Wide Analysis of Nubian Ibex Reveals Candidate Positively Selected Genes That Contribute to Its Adaptation to the Desert Environment
Chebii, Vivien J., Oyola, Samuel O., Kotze, Antoinette, Domelevo Entfellner, Jean-Baka, Musembi Mutuku, J., Agaba, Morris
Published in Animals (Basel) (01.11.2020)
Published in Animals (Basel) (01.11.2020)
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Profiling of RNA Viruses in Biting Midges ( Ceratopogonidae ) and Related Diptera from Kenya Using Metagenomics and Metabarcoding Analysis
Langat, Solomon K, Eyase, Fredrick, Bulimo, Wallace, Lutomiah, Joel, Oyola, Samuel O, Imbuga, Mabel, Sang, Rosemary
Published in mSphere (27.10.2021)
Published in mSphere (27.10.2021)
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Widening geographic range of Rift Valley fever disease clusters associated with climate change in East Africa
Situma, Silvia, Nyakarahuka, Luke, Omondi, Evans, Mureithi, Marianne, Mweu, Marshal Mutinda, Muturi, Matthew, Mwatondo, Athman, Dawa, Jeanette, Konongoi, Limbaso, Khamadi, Samoel, Clancey, Erin, Lofgren, Eric, Osoro, Eric, Ngere, Isaac, Breiman, Robert F, Bakamutumaho, Barnabas, Muruta, Allan, Gachohi, John, Oyola, Samuel O, Njenga, M Kariuki, Singh, Deepti
Published in BMJ global health (10.06.2024)
Published in BMJ global health (10.06.2024)
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A genome wide association study of Plasmodium falciparum susceptibility to 22 antimalarial drugs in Kenya
Wendler, Jason P, Okombo, John, Amato, Roberto, Miotto, Olivo, Kiara, Steven M, Mwai, Leah, Pole, Lewa, O'Brien, John, Manske, Magnus, Alcock, Dan, Drury, Eleanor, Sanders, Mandy, Oyola, Samuel O, Malangone, Cinzia, Jyothi, Dushyanth, Miles, Alistair, Rockett, Kirk A, MacInnis, Bronwyn L, Marsh, Kevin, Bejon, Philip, Nzila, Alexis, Kwiatkowski, Dominic P
Published in PloS one (08.05.2014)
Published in PloS one (08.05.2014)
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Optimized whole-genome amplification strategy for extremely AT-biased template
Oyola, Samuel O, Manske, Magnus, Campino, Susana, Claessens, Antoine, Hamilton, William L, Kekre, Mihir, Drury, Eleanor, Mead, Daniel, Gu, Yong, Miles, Alistair, MacInnis, Bronwyn, Newbold, Chris, Berriman, Matthew, Kwiatkowski, Dominic P
Published in DNA research (01.12.2014)
Published in DNA research (01.12.2014)
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Functional analysis of Leishmania cyclopropane fatty acid synthetase
Oyola, Samuel O, Evans, Krystal J, Smith, Terry K, Smith, Barbara A, Hilley, James D, Mottram, Jeremy C, Kaye, Paul M, Smith, Deborah F
Published in PloS one (10.12.2012)
Published in PloS one (10.12.2012)
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Save lives in the next pandemic: ensure vaccine equity now
Carlson, Colin, Becker, Daniel, Happi, Christian, O’Donoghue, Zoe, de Oliveira, Tulio, Oyola, Samuel O., Poisot, Timothée, Seifert, Stephanie, Phelan, Alexandra
Published in Nature (London) (29.02.2024)
Published in Nature (London) (29.02.2024)
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Isolation and phylogenetic characterization of arboviruses circulating among phlebotomine sandflies in parts of North Rift, Kenya
Koskei, Edith, Langat, Solomon, Mutisya, James, Mulwa, Francis, Lutomiah, Joel, Koka, Hellen, Oyola, Samuel O., Waihenya, Rebecca, Mabeya, Sepha N., Sang, Rosemary
Published in Frontiers in virology (online) (01.05.2024)
Published in Frontiers in virology (online) (01.05.2024)
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