A Stochastic Model of Gene Expression with Polymerase Recruitment and Pause Release
Cao, Zhixing, Filatova, Tatiana, Oyarzún, Diego A., Grima, Ramon
Published in Biophysical journal (01.09.2020)
Published in Biophysical journal (01.09.2020)
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Journal Article
Dynamic optimization of metabolic networks coupled with gene expression
Waldherr, Steffen, Oyarzún, Diego A., Bockmayr, Alexander
Published in Journal of theoretical biology (21.01.2015)
Published in Journal of theoretical biology (21.01.2015)
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Journal Article
Dynamic metabolic control: towards precision engineering of metabolism
Liu, Di, Mannan, Ahmad A., Han, Yichao, Oyarzún, Diego A., Zhang, Fuzhong
Published in Journal of industrial microbiology & biotechnology (01.07.2018)
Published in Journal of industrial microbiology & biotechnology (01.07.2018)
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Journal Article
Fundamental Design Principles for Transcription-Factor-Based Metabolite Biosensors
Mannan, Ahmad A, Liu, Di, Zhang, Fuzhong, Oyarzún, Diego A
Published in ACS synthetic biology (20.10.2017)
Published in ACS synthetic biology (20.10.2017)
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Journal Article
Pathways to cellular supremacy in biocomputing
Grozinger, Lewis, Amos, Martyn, Gorochowski, Thomas E., Carbonell, Pablo, Oyarzún, Diego A., Stoof, Ruud, Fellermann, Harold, Zuliani, Paolo, Tas, Huseyin, Goñi-Moreno, Angel
Published in Nature communications (20.11.2019)
Published in Nature communications (20.11.2019)
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Journal Article
Deep learning for optimization of protein expression
Nikolados, Evangelos-Marios, Oyarzún, Diego A
Published in Current opinion in biotechnology (01.06.2023)
Published in Current opinion in biotechnology (01.06.2023)
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Journal Article
Accuracy and data efficiency in deep learning models of protein expression
Nikolados, Evangelos-Marios, Wongprommoon, Arin, Aodha, Oisin Mac, Cambray, Guillaume, Oyarzún, Diego A.
Published in Nature communications (15.12.2022)
Published in Nature communications (15.12.2022)
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Journal Article
Stabilization of antithetic control via molecular buffering
Hancock, Edward J, Oyarzún, Diego A
Published in Journal of the Royal Society interface (09.03.2022)
Published in Journal of the Royal Society interface (09.03.2022)
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Journal Article
Bayesian Optimization for Design of Multiscale Biological Circuits
Merzbacher, Charlotte, Mac Aodha, Oisin, Oyarzún, Diego A.
Published in ACS synthetic biology (21.07.2023)
Published in ACS synthetic biology (21.07.2023)
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Journal Article
Trade-Offs in Biosensor Optimization for Dynamic Pathway Engineering
Verma, Babita K, Mannan, Ahmad A, Zhang, Fuzhong, Oyarzún, Diego A
Published in ACS synthetic biology (21.01.2022)
Published in ACS synthetic biology (21.01.2022)
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Journal Article
Growth Defects and Loss-of-Function in Synthetic Gene Circuits
Nikolados, Evangelos-Marios, Weiße, Andrea Y, Ceroni, Francesca, Oyarzún, Diego A
Published in ACS synthetic biology (21.06.2019)
Published in ACS synthetic biology (21.06.2019)
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Journal Article
Microbial polysaccharides: An emerging family of natural biomaterials for cancer therapy and diagnostics
Prateeksha, Sharma, Vivek K., Liu, Xiaowen, Oyarzún, Diego A., Abdel-Azeem, Ahmed M., Atanasov, Atanas G., Hesham, Abd El-Latif, Barik, Saroj K., Gupta, Vijai Kumar, Singh, Brahma N.
Published in Seminars in cancer biology (01.11.2022)
Published in Seminars in cancer biology (01.11.2022)
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Journal Article
P1 Bacteriophage-Enabled Delivery of CRISPR-Cas9 Antimicrobial Activity Against Shigella flexneri
Huan, Yang W., Torraca, Vincenzo, Brown, Russell, Fa-arun, Jidapha, Miles, Sydney L., Oyarzún, Diego A., Mostowy, Serge, Wang, Baojun
Published in ACS synthetic biology (17.03.2023)
Published in ACS synthetic biology (17.03.2023)
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Journal Article
Synthetic gene circuits for metabolic control: design trade-offs and constraints
Oyarzún, Diego A., Stan, Guy-Bart V.
Published in Journal of the Royal Society interface (06.01.2013)
Published in Journal of the Royal Society interface (06.01.2013)
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Journal Article
Metabolite Sequestration Enables Rapid Recovery from Fatty Acid Depletion in Escherichia coli
Hartline, Christopher J, Mannan, Ahmad A, Liu, Di, Zhang, Fuzhong, Oyarzún, Diego A
Published in mBio (17.03.2020)
Published in mBio (17.03.2020)
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Journal Article
Analysis of a genetic-metabolic oscillator with piecewise linear models
Chaves, Madalena, Oyarzún, Diego A., Gouzé, Jean-Luc
Published in Journal of theoretical biology (07.02.2019)
Published in Journal of theoretical biology (07.02.2019)
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