Machine Learning Methods for Fluorescence Lifetime Imaging (FLIM) Based Label-Free Detection of Microglia
Sagar, Md Abdul Kader, Cheng, Kevin P., Ouellette, Jonathan N., Williams, Justin C., Watters, Jyoti J., Eliceiri, Kevin W.
Published in Frontiers in neuroscience (03.09.2020)
Published in Frontiers in neuroscience (03.09.2020)
Get full text
Journal Article
A deep learning framework for classifying microglia activation state using morphology and intrinsic fluorescence lifetime data
Mukherjee, Lopamudra, Sagar, Md Abdul Kader, Ouellette, Jonathan N, Watters, Jyoti J, Eliceiri, Kevin W
Published in Frontiers in neuroinformatics (16.12.2022)
Published in Frontiers in neuroinformatics (16.12.2022)
Get full text
Journal Article
Label-free fluorescence lifetime imaging for the assessment of cell viability in living tumor fragments
Smith, Jason T, Liu, Chao J, Degnan, Jeannine, Ouellette, Jonathan N, Conklin, Matthew W, Kellner, Anna V, Scribano, Christina M, Hrycyniak, Laura, Oliner, Jonathan D, Zahm, Chris, Wait, Eric, Eliceiri, Kevin W, Rafter, John
Published in Journal of biomedical optics (01.06.2024)
Published in Journal of biomedical optics (01.06.2024)
Get full text
Journal Article
Joint regression-classification deep learning framework for analyzing fluorescence lifetime images using NADH and FAD
Mukherjee, Lopamudra, Sagar, Md Abdul Kader, Ouellette, Jonathan N., Watters, Jyoti J., Eliceiri, Kevin W.
Published in Biomedical optics express (01.05.2021)
Published in Biomedical optics express (01.05.2021)
Get full text
Journal Article
Navigating the Collagen Jungle: The Biomedical Potential of Fiber Organization in Cancer
Ouellette, Jonathan N, Drifka, Cole R, Pointer, Kelli B, Liu, Yuming, Lieberthal, Tyler J, Kao, W John, Kuo, John S, Loeffler, Agnes G, Eliceiri, Kevin W
Published in Bioengineering (Basel) (21.01.2021)
Published in Bioengineering (Basel) (21.01.2021)
Get full text
Journal Article
Assessing cell viability with dynamic optical coherence microscopy
Liu, Chao J, Smith, Jason T, Wang, Yuanbo, Ouellette, Jonathan N, Rogers, Jeremy D, Oliner, Jonathan D, Szulczewski, Michael, Wait, Eric, Brown, William, Wax, Adam, Eliceiri, Kevin W, Rafter, John
Published in Biomedical optics express (01.03.2024)
Published in Biomedical optics express (01.03.2024)
Get full text
Journal Article
The exosome complex establishes a barricade to erythroid maturation
McIver, Skye C., Kang, Yoon-A, DeVilbiss, Andrew W., O'Driscoll, Chelsea A., Ouellette, Jonathan N., Pope, Nathaniel J., Camprecios, Genis, Chang, Chan-Jung, Yang, David, Bouhassira, Eric E., Ghaffari, Saghi, Bresnick, Emery H.
Published in Blood (02.10.2014)
Published in Blood (02.10.2014)
Get full text
Journal Article
Prior Hypoxia Exposure Enhances Murine Microglial Inflammatory Gene Expression in vitro Without Concomitant H3K4me3 Enrichment
Kiernan, Elizabeth A, Ewald, Andrea C, Ouellette, Jonathan N, Wang, Tao, Agbeh, Abiye, Knutson, Andrew O, Roopra, Avtar S, Watters, Jyoti J
Published in Frontiers in cellular neuroscience (07.10.2020)
Published in Frontiers in cellular neuroscience (07.10.2020)
Get full text
Journal Article
Microglia activation visualization via fluorescence lifetime imaging microscopy of intrinsically fluorescent metabolic cofactors
Sagar, Md. Abdul K, Ouellette, Jonathan N, Cheng, Kevin P, Williams, Justin C, Watters, Jyoti J, Eliceiri, Kevin W
Published in Neurophotonics (Print) (01.07.2020)
Published in Neurophotonics (Print) (01.07.2020)
Get full text
Journal Article
123 Assessing cytotoxic T cell responses in live tumor fragments (LTF)™ with multiphoton microscopy
Smith, Jason Tt, Ouellette, Jonathan N, Kellner, Anna, Liu, Chao, Wargowski, Ellen, Shiller, Max, Bloom, Debra, Nettenstrom, Lauren, Swider, Zac, Degnan, Janey, Korrer, Michael, Conklin, Matt, Flietner, Evan, Johnson, Christin, Doebert, Lindsay, Wait, Eric, Oliner, Jonathan, Rafter, John, Zahm, Christopher D
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
Get full text
Journal Article
Abstract 6444: Assessing cytotoxic T cell responses to immune checkpoint inhibitors in murine and human tumor samples using metabolic imaging
Ouellette, Jonathan, Degnan, Janey, Kellner, Anna, Flietner, Evan, Doebert, Lindsay, Swider, Zachary, Wait, Eric, Pope, Victoria, Hrycyniak, Laura, Caenepeel, Sean, Eliceiri, Kevin, Ramasubramanian, T S., Korrer, Michael J.
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Get full text
Journal Article
Photoreceptor protection via blockade of BET epigenetic readers in a murine model of inherited retinal degeneration
Zhao, Lei, Li, Jun, Fu, Yingmei, Zhang, Mengxue, Wang, Bowen, Ouellette, Jonathan, Shahi, Pawan K, Pattnaik, Bikash R, Watters, Jyoti J, Wong, Wai T, Guo, Lian-Wang
Published in Journal of neuroinflammation (19.01.2017)
Published in Journal of neuroinflammation (19.01.2017)
Get full text
Journal Article
Abstract 2472: Tumor/normal and live/dead classification in live tumor fragments using label-free multiphoton microscopy
Ouellette, Jonathan, Rafter, John, Tweed, Kelsey, Tang, Leung Kau, Scribano, Christina, Adstamongkonkul, Pichet, Schultz, Mikaela, Coburn, Justine, Aldeeb, Maged, Anthony, Neil, Johnson, Christin, Eliceiri, Kevin, Oliner, Jonathan, Zal, Tomasz
Published in Cancer research (Chicago, Ill.) (15.06.2022)
Published in Cancer research (Chicago, Ill.) (15.06.2022)
Get full text
Journal Article
Linking Organelle Remodeling with the Erythroid Cell Genetic Network
Kang, Yoon-A, Ouellette, Jonathan N, Campreciós, Genís, Ghaffari, Saghi, Bresnick, Emery H
Published in Blood (16.11.2012)
Published in Blood (16.11.2012)
Get full text
Journal Article
Recurrent hypoxia in a rat model of sleep apnea during pregnancy leads to microglia-dependent respiratory deficits and persistent neuroinflammation in adult male offspring
Mickelson, Carly R, Ewald, Andrea C, Gumnit, Maia G, Meza, Armand L, Radcliff, Abigail B, Johnson, Stephen M, Ouellette, Jonathan N, Kermath, Bailey A, Roopra, Avtar, Cahill, Michael E, Watters, Jyoti J, Baker-Herman, Tracy
Published in bioRxiv (21.12.2022)
Published in bioRxiv (21.12.2022)
Get full text
Paper