Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya
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Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya
Agoti, Charles N, Otieno, James R, Gitahi, Caroline W, Cane, Patricia A, Nokes, D James
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Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level
Goya, Stephanie, Ruis, Christopher, Neher, Richard A, Meijer, Adam, Aziz, Ammar, Hinrichs, Angie S, von Gottberg, Anne, Roemer, Cornelius, Amoako, Daniel G, Acuna, Dolores, McBroome, Jakob, Otieno, James R, Bhiman, Jinal N, Everatt, Josie, Munoz-Escalante, Juan C, Ramaekers, Kaat, Duggan, Kate, Presser, Lance D, Urbanska, Laura, Venter, Marietjie, Wolter, Nicole, Peret, Teresa C.T, Salimi, Vahid, Potdar, Varsha, Borges, Vitor, Viegas, Mariana
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Published in Emerging infectious diseases (01.08.2024)
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Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007-2016
Oketch, John W, Kamau, Everlyn, Otieno, Grieven P, Otieno, James R, Agoti, Charles N, Nokes, D James
Published in BMC infectious diseases (30.08.2019)
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Origins and Evolution of Seasonal Human Coronaviruses
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Endemic chikungunya fever in Kenyan children: a prospective cohort study
Nyamwaya, Doris K, Otiende, Mark, Omuoyo, Donwilliams O, Githinji, George, Karanja, Henry K, Gitonga, John N, R de Laurent, Zaydah, Otieno, James R, Sang, Rosemary, Kamau, Everlyn, Cheruiyot, Stanley, Otieno, Edward, Agoti, Charles N, Bejon, Philip, Thumbi, Samuel M, Warimwe, George M
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Comparative analysis of spatial-temporal patterns of human metapneumovirus and respiratory syncytial virus in Africa using genetic data, 2011-2014
Oketch, John W, Kamau, Everlyn, Otieno, James R, Mwema, Anthony, Lewa, Clement, Isoe, Everlyne, Nokes, D James, Agoti, Charles N
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TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization
Ambrosio, Frank J., Scribner, Michelle R., Wright, Sage M., Otieno, James R., Doughty, Emma L., Gorzalski, Andrew, Siao, Danielle Denise, Killian, Steve, Hua, Chi, Schneider, Emily, Tran, Michael, Varghese, Vici, Libuit, Kevin G., Pandori, Mark, Sevinsky, Joel R., Hess, David
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Agoti, Charles N., Munywoki, Patrick K., Phan, My V. T., Otieno, James R., Kamau, Everlyn, Bett, Anne, Kombe, Ivy, Githinji, George, Medley, Graham F., Cane, Patricia A., Kellam, Paul, Cotten, Matthew, Nokes, D. James
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Published in Virus Evolution (01.01.2017)
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Grant, Rebecca, Sacks, Jilian A, Abraham, Priya, Chunsuttiwat, Supamit, Cohen, Cheryl, Figueroa, J Peter, Fleming, Thomas, Fine, Paul, Goldblatt, David, Hasegawa, Hideki, MacIntrye, C Raina, Memish, Ziad A, Miller, Elizabeth, Nishioka, Sergio, Sall, Amadou A, Sow, Samba, Tomori, Oyewale, Wang, Youchun, Van Kerkhove, Maria D, Wambo, Marie-Ange, Cohen, Homa Attar, Mesfin, Samuel, Otieno, James R, Subissi, Lorenzo, Briand, Sylvie, Wentworth, David E, Subbarao, Kanta
Published in Nature medicine (01.04.2023)
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Agoti, Charles N, Otieno, James R, Ngama, Mwanajuma, Mwihuri, Alexander G, Medley, Graham F, Cane, Patricia A, Nokes, D James
Published in Journal of virology (01.11.2015)
Published in Journal of virology (01.11.2015)
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Peripheral blood mononuclear cell transcriptomes reveal an over-representation of down-regulated genes associated with immunity in HIV-exposed uninfected infants
Musimbi, Zaneta D, Rono, Martin K, Otieno, James R, Kibinge, Nelson, Ochola-Oyier, Lynette Isabella, de Villiers, Etienne Pierre, Nduati, Eunice W
Published in Scientific reports (02.12.2019)
Published in Scientific reports (02.12.2019)
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Molecular Evolutionary Dynamics of Respiratory Syncytial Virus Group A in Recurrent Epidemics in Coastal Kenya
Otieno, James R, Agoti, Charles N, Gitahi, Caroline W, Bett, Ann, Ngama, Mwanajuma, Medley, Graham F, Cane, Patricia A, Nokes, D James
Published in Journal of virology (15.05.2016)
Published in Journal of virology (15.05.2016)
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Spatial‐temporal distribution and sequence diversity of group a human respiratory syncytial viruses in Kenya preceding the emergence of ON1 genotype
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Published in Influenza and other respiratory viruses (01.05.2022)
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Libuit, Kevin G, Doughty, Emma L, Otieno, James R, Ambrosio, Frank, Kapsak, Curtis J, Smith, Emily A, Wright, Sage M, Scribner, Michelle R, Petit Iii, Robert A, Mendes, Catarina Inês, Huergo, Marcela, Legacki, Gregory, Loreth, Christine, Park, Daniel J, Sevinsky, Joel R
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Published in Microbial genomics (01.07.2023)
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Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009‐2017
Owuor, D. Collins, Ngoi, Joyce M., Otieno, James R., Otieno, Grieven P., Nyasimi, Festus M., Nyiro, Joyce U., Agoti, Charles N., Chaves, Sandra S., Nokes, D. James
Published in Influenza and other respiratory viruses (01.05.2020)
Published in Influenza and other respiratory viruses (01.05.2020)
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