Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients
Sperry, Megan M, Oskotsky, Tomiko T, Marić, Ivana, Kaushal, Shruti, Takeda, Takako, Horvath, Viktor, Powers, Rani K, Rodas, Melissa, Furlong, Brooke, Soong, Mercy, Prabhala, Pranav, Goyal, Girija, Carlson, Kenneth E, Wong, Ronald J, Kosti, Idit, Le, Brian L, Logue, James, Hammond, Holly, Frieman, Matthew, Stevenson, David K, Ingber, Donald E, Sirota, Marina, Novak, Richard
Published in PLoS computational biology (01.05.2023)
Published in PLoS computational biology (01.05.2023)
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Journal Article
Similarities and differences in Alzheimer’s dementia comorbidities in racialized populations identified from electronic medical records
Woldemariam, Sarah R., Tang, Alice S., Oskotsky, Tomiko T., Yaffe, Kristine, Sirota, Marina
Published in Communications medicine (08.04.2023)
Published in Communications medicine (08.04.2023)
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Journal Article
MaLiAmPi enables generalizable and taxonomy-independent microbiome features from technically diverse 16S-based microbiome studies
Minot, Samuel S, Garb, Bailey, Roldan, Alennie, Tang, Alice S, Oskotsky, Tomiko T, Rosenthal, Christopher, Hoffman, Noah G, Sirota, Marina, Golob, Jonathan L
Published in Cell reports methods (20.11.2023)
Published in Cell reports methods (20.11.2023)
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Journal Article
Identifying therapeutic candidates for endometriosis through a transcriptomics-based drug repositioning approach
Oskotsky, Tomiko T., Bhoja, Arohee, Bunis, Daniel, Le, Brian L., Tang, Alice S., Kosti, Idit, Li, Christine, Houshdaran, Sahar, Sen, Sushmita, Vallvé-Juanico, Júlia, Wang, Wanxin, Arthurs, Erin, Govil, Arpita, Mahoney, Lauren, Lang, Lindsey, Gaudilliere, Brice, Stevenson, David K., Irwin, Juan C., Giudice, Linda C., McAllister, Stacy L., Sirota, Marina
Published in iScience (19.04.2024)
Published in iScience (19.04.2024)
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Journal Article
Endometriosis in the era of precision medicine and impact on sexual and reproductive health across the lifespan and in diverse populations
Giudice, Linda C., Oskotsky, Tomiko T., Falako, Simileoluwa, Opoku‐Anane, Jessica, Sirota, Marina
Published in The FASEB journal (01.09.2023)
Published in The FASEB journal (01.09.2023)
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Journal Article
Harnessing EHR data for health research
Tang, Alice S., Woldemariam, Sarah R., Miramontes, Silvia, Norgeot, Beau, Oskotsky, Tomiko T., Sirota, Marina
Published in Nature medicine (01.07.2024)
Published in Nature medicine (01.07.2024)
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Journal Article
Discovery of sparse, reliable omic biomarkers with Stabl
Hédou, Julien, Marić, Ivana, Bellan, Grégoire, Einhaus, Jakob, Gaudillière, Dyani K., Ladant, Francois-Xavier, Verdonk, Franck, Stelzer, Ina A., Feyaerts, Dorien, Tsai, Amy S., Ganio, Edward A., Sabayev, Maximilian, Gillard, Joshua, Amar, Jonas, Cambriel, Amelie, Oskotsky, Tomiko T., Roldan, Alennie, Golob, Jonathan L., Sirota, Marina, Bonham, Thomas A., Sato, Masaki, Diop, Maïgane, Durand, Xavier, Angst, Martin S., Stevenson, David K., Aghaeepour, Nima, Montanari, Andrea, Gaudillière, Brice
Published in Nature biotechnology (02.01.2024)
Published in Nature biotechnology (02.01.2024)
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Journal Article
Data-driven insights can transform women's reproductive health
Oskotsky, Tomiko T, Yin, Ophelia, Khan, Umair, Arnaout, Leen, Sirota, Marina
Published in npj women's health (01.01.2024)
Published in npj women's health (01.01.2024)
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Journal Article
Leveraging electronic health records and knowledge networks for Alzheimer's disease prediction and sex-specific biological insights
Tang, Alice S, Rankin, Katherine P, Cerono, Gabriel, Miramontes, Silvia, Mills, Hunter, Roger, Jacquelyn, Zeng, Billy, Nelson, Charlotte, Soman, Karthik, Woldemariam, Sarah, Li, Yaqiao, Lee, Albert, Bove, Riley, Glymour, Maria, Aghaeepour, Nima, Oskotsky, Tomiko T, Miller, Zachary, Allen, Isabel E, Sanders, Stephan J, Baranzini, Sergio, Sirota, Marina
Published in Nature aging (01.03.2024)
Published in Nature aging (01.03.2024)
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Journal Article
VMAP: Vaginal Microbiome Atlas during Pregnancy
Parraga-Leo, Antonio, Oskotsky, Tomiko T, Oskotsky, Boris, Wibrand, Camilla, Roldan, Alennie, Tang, Alice S, Ha, Connie W Y, Wong, Ronald J, Minot, Samuel S, Andreoletti, Gaia, Kosti, Idit, Theis, Kevin R, Ng, Sherrianne, Lee, Yun S, Diaz-Gimeno, Patricia, Bennett, Phillip R, MacIntyre, David A, Lynch, Susan V, Romero, Roberto, Tarca, Adi L, Stevenson, David K, Aghaeepour, Nima, Golob, Jonathan L, Sirota, Marina
Published in JAMIA open (01.10.2024)
Published in JAMIA open (01.10.2024)
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Journal Article
Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research
Golob, Jonathan L, Oskotsky, Tomiko T, Tang, Alice S, Roldan, Alennie, Chung, Verena, Ha, Connie W Y, Wong, Ronald J, Flynn, Kaitlin J, Parraga-Leo, Antonio, Wibrand, Camilla, Minot, Samuel S, Oskotsky, Boris, Andreoletti, Gaia, Kosti, Idit, Bletz, Julie, Nelson, Amber, Gao, Jifan, Wei, Zhoujingpeng, Chen, Guanhua, Tang, Zheng-Zheng, Novielli, Pierfrancesco, Romano, Donato, Pantaleo, Ester, Amoroso, Nicola, Monaco, Alfonso, Vacca, Mirco, De Angelis, Maria, Bellotti, Roberto, Tangaro, Sabina, Kuntzleman, Abigail, Bigcraft, Isaac, Techtmann, Stephen, Bae, Daehun, Kim, Eunyoung, Jeon, Jongbum, Joe, Soobok, Theis, Kevin R, Ng, Sherrianne, Lee, Yun S, Diaz-Gimeno, Patricia, Bennett, Phillip R, MacIntyre, David A, Stolovitzky, Gustavo, Lynch, Susan V, Albrecht, Jake, Gomez-Lopez, Nardhy, Romero, Roberto, Stevenson, David K, Aghaeepour, Nima, Tarca, Adi L, Costello, James C, Sirota, Marina
Published in Cell reports. Medicine (16.01.2024)
Published in Cell reports. Medicine (16.01.2024)
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Journal Article
Exposure to autoimmune disorders increases Alzheimer's disease risk in a multi-site electronic health record analysis
Ramey, Grace D, Tang, Alice, Phongpreecha, Thanaphong, Yang, Monica M, Woldemariam, Sarah R, Oskotsky, Tomiko T, Montine, Thomas J, Allen, Isabel, Miller, Zachary A, Aghaeepour, Nima, Capra, John A, Sirota, Marina
Published in medRxiv : the preprint server for health sciences (04.05.2024)
Published in medRxiv : the preprint server for health sciences (04.05.2024)
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Journal Article
VMAP: Vaginal Microbiome Atlas During Pregnancy
Parraga-Leo, Antonio, Oskotsky, Tomiko T, Oskotsky, Boris, Wibrand, Camilla, Roldan, Alennie, Tang, Alice, Ha, Connie W Y, Wong, Ronald J, Minot, Samuel S, Andreoletti, Gaia, Kosti, Idit, Theis, Kevin R, Ng, Sherrianne, Lee, Yun S, Diaz-Gimeno, Patricia, Bennett, Phillip R, MacIntyre, David A, Lynch, Susan V, Romero, Roberto, Tarca, Adi L, Stevenson, David K, Aghaeepour, Nima, Golob, Jonathan, Sirota, Marina
Published in medRxiv : the preprint server for health sciences (05.04.2023)
Published in medRxiv : the preprint server for health sciences (05.04.2023)
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Journal Article
Microbiome Preterm Birth DREAM Challenge: Crowdsourcing Machine Learning Approaches to Advance Preterm Birth Research
Golob, Jonathan L, Oskotsky, Tomiko T, Tang, Alice S, Roldan, Alennie, Chung, Verena, Ha, Connie W Y, Wong, Ronald J, Flynn, Kaitlin J, Parraga-Leo, Antonio, Wibrand, Camilla, Minot, Samuel S, Andreoletti, Gaia, Kosti, Idit, Bletz, Julie, Nelson, Amber, Gao, Jifan, Wei, Zhoujingpeng, Chen, Guanhua, Tang, Zheng-Zheng, Novielli, Pierfrancesco, Romano, Donato, Pantaleo, Ester, Amoroso, Nicola, Monaco, Alfonso, Vacca, Mirco, De Angelis, Maria, Bellotti, Roberto, Tangaro, Sabina, Kuntzleman, Abigail, Bigcraft, Isaac, Techtmann, Stephen, Bae, Daehun, Kim, Eunyoung, Jeon, Jongbum, Joe, Soobok, Theis, Kevin R, Ng, Sherrianne, Lee Li, Yun S, Diaz-Gimeno, Patricia, Bennett, Phillip R, MacIntyre, David A, Stolovitzky, Gustavo, Lynch, Susan V, Albrecht, Jake, Gomez-Lopez, Nardhy, Romero, Roberto, Stevenson, David K, Aghaeepour, Nima, Tarca, Adi L, Costello, James C, Sirota, Marina
Published in medRxiv : the preprint server for health sciences (11.04.2023)
Published in medRxiv : the preprint server for health sciences (11.04.2023)
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Journal Article
Drugs in COVID19 clinical trials: Predicting transporter‐mediated drug‐drug interactions using in vitro assays and real‐world data
Yee, Sook Wah, Vora, Bianca, Oskotsky, Tomiko T, Zou, Ling, Jakobsen, Sebastian, Enogieru, Osatohanmwen J, Koleske, Megan L, Kosti, Idit, Rödin, Mattias, Sirota, Marina, Giacomini, Kathleen M
Published in Clinical Pharmacology & Therapeutics (24.03.2021)
Published in Clinical Pharmacology & Therapeutics (24.03.2021)
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