Global Mapping of c-Myc Binding Sites and Target Gene Networks in Human B Cells
Zeller, Karen I., Zhao, XiaoDong, Lee, Charlie W. H., Chiu, Kuo Ping, Yao, Fei, Yustein, Jason T., Ooi, Hong Sain, Orlov, Yuriy L., Shahab, Atif, Yong, How Choong, Fu, YuTao, Weng, Zhiping, Kuznetsov, Vladimir A., Sung, Wing-Kin, Ruan, Yijun, Dang, Chi V., Wei, Chia-Lin
Published in Proceedings of the National Academy of Sciences - PNAS (21.11.2006)
Published in Proceedings of the National Academy of Sciences - PNAS (21.11.2006)
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Journal Article
Parameterization of disorder predictors for large-scale applications requiring high specificity by using an extended benchmark dataset
Sirota, Fernanda L, Ooi, Hong-Sain, Gattermayer, Tobias, Schneider, Georg, Eisenhaber, Frank, Maurer-Stroh, Sebastian
Published in BMC genomics (10.02.2010)
Published in BMC genomics (10.02.2010)
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Journal Article
Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)
Ruan, Yijun, Ooi, Hong Sain, Choo, Siew Woh, Chiu, Kuo Ping, Zhao, Xiao Dong, Srinivasan, K G, Yao, Fei, Choo, Chiou Yu, Liu, Jun, Ariyaratne, Pramila, Bin, Wilson G W, Kuznetsov, Vladimir A, Shahab, Atif, Sung, Wing-Kin, Bourque, Guillaume, Palanisamy, Nallasivam, Wei, Chia-Lin
Published in Genome Research (01.06.2007)
Published in Genome Research (01.06.2007)
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Journal Article
An oestrogen-receptor-alpha-bound human chromatin interactome
Fullwood, Melissa J, Liu, Mei Hui, Pan, You Fu, Liu, Jun, Xu, Han, Mohamed, Yusoff Bin, Orlov, Yuriy L, Velkov, Stoyan, Ho, Andrea, Mei, Poh Huay, Chew, Elaine G Y, Huang, Phillips Yao Hui, Welboren, Willem-Jan, Han, Yuyuan, Ooi, Hong Sain, Ariyaratne, Pramila N, Vega, Vinsensius B, Luo, Yanquan, Tan, Peck Yean, Choy, Pei Ye, Wansa, K D Senali Abayratna, Zhao, Bing, Lim, Kar Sian, Leow, Shi Chi, Yow, Jit Sin, Joseph, Roy, Li, Haixia, Desai, Kartiki V, Thomsen, Jane S, Lee, Yew Kok, Karuturi, R Krishna Murthy, Herve, Thoreau, Bourque, Guillaume, Stunnenberg, Hendrik G, Ruan, Xiaoan, Cacheux-Rataboul, Valere, Sung, Wing-Kin, Liu, Edison T, Wei, Chia-Lin, Cheung, Edwin, Ruan, Yijun
Published in Nature (London) (05.11.2009)
Published in Nature (London) (05.11.2009)
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Journal Article
ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
Li, Guoliang, Fullwood, Melissa J, Xu, Han, Mulawadi, Fabianus Hendriyan, Velkov, Stoyan, Vega, Vinsensius, Ariyaratne, Pramila Nuwantha, Mohamed, Yusoff Bin, Ooi, Hong-Sain, Tennakoon, Chandana, Wei, Chia-Lin, Ruan, Yijun, Sung, Wing-Kin
Published in Genome biology (25.02.2010)
Published in Genome biology (25.02.2010)
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Journal Article
Genome sequencing and application of Taiwanese macaque Macaca cyclopis
Chiu, Kuo-Ping, Stuart, Lutimba, Ooi, Hong Sain, Yu, John, Smith, David Glenn, Pei, Kurtis Jai-Chyi
Published in Scientific reports (17.07.2023)
Published in Scientific reports (17.07.2023)
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Journal Article
Genomic analyses of unique carbohydrate and phytohormone metabolism in the macroalga Gracilariopsis lemaneiformis (Rhodophyta)
Sun, Xue, Wu, Jun, Wang, Guangce, Kang, Yani, Ooi, Hong Sain, Shen, Tingting, Wang, Fangjun, Yang, Rui, Xu, Nianjun, Zhao, Xiaodong
Published in BMC plant biology (25.05.2018)
Published in BMC plant biology (25.05.2018)
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Journal Article
Genome-wide profiling of polyadenylation sites reveals a link between selective polyadenylation and cancer metastasis
Lai, Deng-Pan, Tan, Sheng, Kang, Ya-Ni, Wu, Jun, Ooi, Hong-Sain, Chen, Jian, Shen, Ting-Ting, Qi, Ying, Zhang, Xiaoli, Guo, Yan, Zhu, Tao, Liu, Bingya, Shao, Zhifeng, Zhao, Xiaodong
Published in Human molecular genetics (15.06.2015)
Published in Human molecular genetics (15.06.2015)
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Journal Article
ANNIE: integrated de novo protein sequence annotation
Ooi, Hong Sain, Kwo, Chia Yee, Wildpaner, Michael, Sirota, Fernanda L, Eisenhaber, Birgit, Maurer-Stroh, Sebastian, Wong, Wing Cheong, Schleiffer, Alexander, Eisenhaber, Frank, Schneider, Georg
Published in Nucleic acids research (01.07.2009)
Published in Nucleic acids research (01.07.2009)
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Journal Article
Databases of protein-protein interactions and complexes
Ooi, Hong Sain, Schneider, Georg, Chan, Ying-Leong, Lim, Teng-Ting, Eisenhaber, Birgit, Eisenhaber, Frank
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2010)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2010)
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Journal Article
An oestrogen-receptor-a-bound human chromatin interactome
FULLWOOD, Melissa J, MEI HUI LIU, CHEW, Elaine G. Y, HUANG, Phillips Yao Hui, WELBOREN, Willem-Jan, YUYUAN HAN, HONG SAIN OOI, ARIYARATNE, Pramila N, VEGA, Vinsensius B, YANQUAN LUO, PECK YEAN TAN, CHOY, Pei Ye, YOU FU PAN, SENALI ABAYRATNA WANSA, K. D, BING ZHAO, KAR SIAN LIM, SHI CHI LEOW, JIT SIN YOW, JOSEPH, Roy, HAIXIA LI, DESAI, Kartiki V, THOMSEN, Jane S, YEW KOK LEE, JUN LIU, KRISHNA MURTHY KARUTURI, R, HERVE, Thoreau, BOURQUE, Guillaume, STUNNENBERG, Hendrik G, XIAOAN RUAN, CACHEUX-RATABOUL, Valere, SUNG, Wing-Kin, LIU, Edison T, WEI, Chia-Lin, CHEUNG, Edwin, HAN XU, YIJUN RUAN, BIN MOHAMED, Yusoff, ORLOV, Yuriy L, VELKOV, Stoyan, HO, Andrea, MEI, Poh Huay
Published in Nature (London) (05.11.2009)
Published in Nature (London) (05.11.2009)
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Journal Article
MALAT1 long ncRNA promotes gastric cancer metastasis by suppressing PCDH10
Qi, Ying, Ooi, Hong Sain, Wu, Jun, Chen, Jian, Zhang, Xiaoli, Tan, Sheng, Yu, Qing, Li, Yuan-Yuan, Kang, Yani, Li, Hua, Xiong, Zirui, Zhu, Tao, Liu, Bingya, Shao, Zhifeng, Zhao, Xiaodong
Published in Oncotarget (15.03.2016)
Published in Oncotarget (15.03.2016)
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Journal Article
Identification of the BRD1 interaction network and its impact on mental disorder risk
Fryland, Tue, Christensen, Jane H, Pallesen, Jonatan, Mattheisen, Manuel, Palmfeldt, Johan, Bak, Mads, Grove, Jakob, Demontis, Ditte, Blechingberg, Jenny, Ooi, Hong Sain, Nyegaard, Mette, Hauberg, Mads E, Tommerup, Niels, Gregersen, Niels, Mors, Ole, Corydon, Thomas J, Nielsen, Anders L, Børglum, Anders D
Published in Genome medicine (03.05.2016)
Published in Genome medicine (03.05.2016)
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Journal Article
Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes
Ng, Patrick, Tan, Jack J.S., Ooi, Hong Sain, Lee, Yen Ling, Chiu, Kuo Ping, Fullwood, Melissa J., Srinivasan, Kandhadayar G., Perbost, Clotilde, Du, Lei, Sung, Wing-Kin, Wei, Chia-Lin, Ruan, Yijun
Published in Nucleic acids research (01.01.2006)
Published in Nucleic acids research (01.01.2006)
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Journal Article
Genome-wide profiling of untranslated regions by paired-end ditag sequencing reveals unexpected transcriptome complexity in yeast
Kang, Ya-Ni, Lai, Deng-Pan, Ooi, Hong Sain, Shen, Ting-ting, Kou, Yao, Tian, Jing, Czajkowsky, Daniel M, Shao, Zhifeng, Zhao, Xiaodong
Published in Molecular genetics and genomics : MGG (01.02.2015)
Published in Molecular genetics and genomics : MGG (01.02.2015)
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Journal Article
Biomolecular pathway databases
Ooi, Hong Sain, Schneider, Georg, Lim, Teng-Ting, Chan, Ying-Leong, Eisenhaber, Birgit, Eisenhaber, Frank
Published in Methods in molecular biology (Clifton, N.J.) (2010)
Published in Methods in molecular biology (Clifton, N.J.) (2010)
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Journal Article
PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data
Chiu, Kuo Ping, Wong, Chee-Hong, Chen, Qiongyu, Ariyaratne, Pramila, Ooi, Hong Sain, Wei, Chia-Lin, Sung, Wing-Kin Ken, Ruan, Yijun
Published in BMC bioinformatics (25.08.2006)
Published in BMC bioinformatics (25.08.2006)
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Journal Article
High-speed stream cipher
Ooi, H.-S.
Published in 18th International Conference on Advanced Information Networking and Applications, 2004. AINA 2004 (2004)
Published in 18th International Conference on Advanced Information Networking and Applications, 2004. AINA 2004 (2004)
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Conference Proceeding