Linked‐read sequencing enables haplotype‐resolved resequencing at population scale
Lutgen, Dave, Ritter, Raphael, Olsen, Remi‐André, Schielzeth, Holger, Gruselius, Joel, Ewels, Philip, García, Jesús T., Shirihai, Hadoram, Schweizer, Manuel, Suh, Alexander, Burri, Reto
Published in Molecular ecology resources (01.09.2020)
Published in Molecular ecology resources (01.09.2020)
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Journal Article
Genomic trajectories of a near-extinction event in the Chatham Island black robin
von Seth, Johanna, van der Valk, Tom, Lord, Edana, Sigeman, Hanna, Olsen, Remi-André, Knapp, Michael, Kardailsky, Olga, Robertson, Fiona, Hale, Marie, Houston, Dave, Kennedy, Euan, Dalén, Love, Norén, Karin, Massaro, Melanie, Robertson, Bruce C, Dussex, Nicolas
Published in BMC genomics (10.11.2022)
Published in BMC genomics (10.11.2022)
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Journal Article
Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet
Gelabert, Pere, Sandoval-Velasco, Marcela, Serres, Aitor, de Manuel, Marc, Renom, Pere, Margaryan, Ashot, Stiller, Josefin, de-Dios, Toni, Fang, Qi, Feng, Shaohong, Mañosa, Santi, Pacheco, George, Ferrando-Bernal, Manuel, Shi, Guolin, Hao, Fei, Chen, Xianqing, Petersen, Bent, Olsen, Remi-André, Navarro, Arcadi, Deng, Yuan, Dalén, Love, Marquès-Bonet, Tomàs, Zhang, Guojie, Antunes, Agostinho, Gilbert, M. Thomas P., Lalueza-Fox, Carles
Published in Current biology (06.01.2020)
Published in Current biology (06.01.2020)
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Journal Article
A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern
Höglund, Jacob, Dias, Guilherme, Olsen, Remi-André, Soares, André, Bunikis, Ignas, Talla, Venkat, Backström, Niclas
Published in Genome biology and evolution (01.02.2024)
Published in Genome biology and evolution (01.02.2024)
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Journal Article
T-cell receptor-HLA-DRB1 associations suggest specific antigens in pulmonary sarcoidosis
Grunewald, Johan, Kaiser, Ylva, Ostadkarampour, Mahyar, Rivera, Natalia V, Vezzi, Francesco, Lötstedt, Britta, Olsen, Remi-André, Sylwan, Lina, Lundin, Sverker, Käller, Max, Sandalova, Tatiana, Ahlgren, Kerstin M, Wahlström, Jan, Achour, Adnane, Ronninger, Marcus, Eklund, Anders
Published in The European respiratory journal (01.03.2016)
Published in The European respiratory journal (01.03.2016)
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Journal Article
An annotated chromosome-scale reference genome for Eastern black-eared wheatear (Oenanthe melanoleuca)
Peona, Valentina, Palacios-Gimenez, Octavio Manuel, Lutgen, Dave, Olsen, Remi André, Alaei Kakhki, Niloofar, Andriopoulos, Pavlos, Bontzorlos, Vasileios, Schweizer, Manuel, Suh, Alexander, Burri, Reto
Published in G3 : genes - genomes - genetics (01.06.2023)
Published in G3 : genes - genomes - genetics (01.06.2023)
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Journal Article
Genome-wide evidence supports mitochondrial relationships and pervasive parallel phenotypic evolution in open-habitat chats
Schweizer, Manuel, Warmuth, Vera M., Alaei Kakhki, Niloofar, Aliabadian, Mansour, Förschler, Marc, Shirihai, Hadoram, Ewels, Phil, Gruselius, Joel, Olsen, Remi-André, Schielzeth, Holger, Suh, Alexander, Burri, Reto
Published in Molecular phylogenetics and evolution (01.10.2019)
Published in Molecular phylogenetics and evolution (01.10.2019)
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Journal Article
Population dynamics and demographic history of Eurasian collared lemmings
Lord, Edana, Marangoni, Aurelio, Baca, Mateusz, Popović, Danijela, Goropashnaya, Anna V, Stewart, John R, Knul, Monika V, Noiret, Pierre, Germonpré, Mietje, Jimenez, Elodie-Laure, Abramson, Natalia I, Vartanyan, Sergey, Prost, Stefan, Smirnov, Nickolay G, Kuzmina, Elena A, Olsen, Remi-André, Fedorov, Vadim B, Dalén, Love
Published in BMC ecology and evolution (03.11.2022)
Published in BMC ecology and evolution (03.11.2022)
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Web Resource
3-D chromatin conformation, accessibility, and gene expression profiling of triple-negative breast cancer
Llinàs-Arias, Pere, Ensenyat-Méndez, Miquel, Orozco, Javier I J, Íñiguez-Muñoz, Sandra, Valdez, Betsy, Wang, Chuan, Mezger, Anja, Choi, Eunkyoung, Tran, Yan Zhou, Yao, Liqun, Bonath, Franziska, Olsen, Remi-André, Ormestad, Mattias, Esteller, Manel, Lupien, Mathieu, Marzese, Diego M
Published in BMC genetics (02.11.2023)
Published in BMC genetics (02.11.2023)
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Journal Article
Linked-read whole-genome sequencing resolves common and private structural variants in multiple myeloma
Peña-Pérez, Lucía, Frengen, Nicolai, Hauenstein, Julia, Gran, Charlotte, Gustafsson, Charlotte, Eisfeldt, Jesper, Kierczak, Marcin, Taborsak-Lines, Fanny, Olsen, Remi-André, Wallblom, Ann, Krstic, Aleksandra, Ewels, Philip, Lindstrand, Anna, Månsson, Robert
Published in Blood advances (13.09.2022)
Published in Blood advances (13.09.2022)
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Journal Article
Genomic and fitness consequences of inbreeding in an endangered carnivore
Hasselgren, Malin, Dussex, Nicolas, Seth, Johanna, Angerbjörn, Anders, Olsen, Remi‐André, Dalén, Love, Norén, Karin
Published in Molecular ecology (01.06.2021)
Published in Molecular ecology (01.06.2021)
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Journal Article
Orthopteran Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and Evolution of Supergenes
Jayaprasad, Suvratha, Peona, Valentina, Ellerstrand, Simon J, Rossini, Roberto, Bunikis, Ignas, Pettersson, Olga V, Olsen, Remi-André, Rubin, Carl-Johan, Einarsdottir, Elisabet, Bonath, Franziska, Bradford, Tessa M, Cooper, Steven J B, Hansson, Bengt, Suh, Alexander, Kawakami, Takeshi, Schielzeth, Holger, Palacios-Gimenez, Octavio M
Published in Molecular ecology (30.10.2024)
Published in Molecular ecology (30.10.2024)
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Journal Article
Ancient and modem genomes unravel the evolutionary history of the rhinoceros family
Liu, S L, Westbury, M V, Dussex, N, Mitchell, K J, Sinding, M H S, Heintzman, P D, Duchene, D A, Kapp, J D, von Seth, J, Heiniger, H, Sanchez-Barreiro, F, Margaryan, A, Andre-Olsen, R, De Cahsan, B, Meng, G L, Yang, C T, Chen, L, van der Valk, T, Moodley, Y, Rookmaaker, K, Bruford, M W, Ryder, O, Steiner, C, Bruins-van Sonsbeek, L G R, Vartanyan, S, Guo, C X, Cooper, A, Kosintsev, P, Kirillova, I, Lister, A M, Marques-Bonet, T, Gopalakrishnan, S, Dunn, R R, Lorenzen, E D, Shapiro, B, Zhang, G J, Antoine, P O, Dalen, L, Gilbert, M T P
Published in Cell (2021)
Published in Cell (2021)
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Journal Article
Moose genomes reveal past glacial demography and the origin of modern lineages
Dussex, Nicolas, Alberti, Federica, Heino, Matti T, Olsen, Remi-Andre, van der Valk, Tom, Ryman, Nils, Laikre, Linda, Ahlgren, Hans, Askeyev, Igor V, Askeyev, Oleg V, Shaymuratova, Dilyara N, Askeyev, Arthur O, Döppes, Doris, Friedrich, Ronny, Lindauer, Susanne, Rosendahl, Wilfried, Aspi, Jouni, Hofreiter, Michael, Lidén, Kerstin, Dalén, Love, Díez-Del-Molino, David
Published in BMC genomics (02.12.2020)
Published in BMC genomics (02.12.2020)
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Journal Article
Interspecific Gene Flow and the Evolution of Specialization in Black and White Rhinoceros
Moodley, Yoshan, Westbury, Michael V, Russo, Isa-Rita M, Gopalakrishnan, Shyam, Rakotoarivelo, Andrinajoro, Olsen, Remi-Andre, Prost, Stefan, Tunstall, Tate, Ryder, Oliver A, Dalén, Love, Bruford, Michael W
Published in Molecular biology and evolution (01.11.2020)
Published in Molecular biology and evolution (01.11.2020)
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Journal Article
A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements
Arnqvist, Göran, Westerberg, Ivar, Galbraith, James, Sayadi, Ahmed, Scofield, Douglas G, Olsen, Remi-André, Immonen, Elina, Bonath, Franziska, Ewels, Philip, Suh, Alexander
Published in G3 : genes - genomes - genetics (07.02.2024)
Published in G3 : genes - genomes - genetics (07.02.2024)
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Journal Article
High throughput barcoding method for genome-scale phasing
Redin, David, Frick, Tobias, Aghelpasand, Hooman, Käller, Max, Borgström, Erik, Olsen, Remi-Andre, Ahmadian, Afshin
Published in Scientific reports (02.12.2019)
Published in Scientific reports (02.12.2019)
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Journal Article
Range-wide and temporal genomic analyses reveal the consequences of near-extinction in Swedish moose
Dussex, Nicolas, Kurland, Sara, Olsen, Remi-André, Spong, Göran, Ericsson, Göran, Ekblom, Robert, Ryman, Nils, Dalén, Love, Laikre, Linda
Published in Communications biology (17.10.2023)
Published in Communications biology (17.10.2023)
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Journal Article
Chromosomal genome assembly of the ethanol production strain CBS 11270 indicates a highly dynamic genome structure in the yeast species Brettanomyces bruxellensis
Tiukova, Ievgeniia A, Pettersson, Mats E, Hoeppner, Marc P, Olsen, Remi-Andre, Käller, Max, Nielsen, Jens, Dainat, Jacques, Lantz, Henrik, Söderberg, Jonas, Passoth, Volkmar
Published in PloS one (01.05.2019)
Published in PloS one (01.05.2019)
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