Explainable deep drug–target representations for binding affinity prediction
Monteiro, Nelson R. C, Simões, Carlos J. V, Ãvila, Henrique V, Abbasi, Maryam, Oliveira, José L, Arrais, Joel P
Published in BMC bioinformatics (17.06.2022)
Published in BMC bioinformatics (17.06.2022)
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Representation learning for mammography mass lesion classification with convolutional neural networks
Arevalo, John, González, Fabio A, Ramos-Pollán, Raúl, Oliveira, Jose L, Guevara Lopez, Miguel Angel
Published in Computer methods and programs in biomedicine (01.04.2016)
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Phenotypic heterogeneity promotes adaptive evolution
Bódi, Zoltán, Farkas, Zoltán, Nevozhay, Dmitry, Kalapis, Dorottya, Lázár, Viktória, Csörgő, Bálint, Nyerges, Ákos, Szamecz, Béla, Fekete, Gergely, Papp, Balázs, Araújo, Hugo, Oliveira, José L, Moura, Gabriela, Santos, Manuel A S, Székely, Jr, Tamás, Balázsi, Gábor, Pál, Csaba
Published in PLoS biology (09.05.2017)
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DTITR: End-to-end drug–target binding affinity prediction with transformers
Monteiro, Nelson R.C., Oliveira, José L., Arrais, Joel P.
Published in Computers in biology and medicine (01.08.2022)
Published in Computers in biology and medicine (01.08.2022)
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Designing optimized drug candidates with Generative Adversarial Network
Abbasi, Maryam, Santos, Beatriz P., Pereira, Tiago C., Sofia, Raul, Monteiro, Nelson R. C., Simões, Carlos J. V., Brito, Rui M. M., Ribeiro, Bernardete, Oliveira, José L., Arrais, Joel P.
Published in Journal of cheminformatics (26.06.2022)
Published in Journal of cheminformatics (26.06.2022)
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FSM-DDTR: End-to-end feedback strategy for multi-objective De Novo drug design using transformers
Monteiro, Nelson R.C., Pereira, Tiago O., Machado, Ana Catarina D., Oliveira, José L., Abbasi, Maryam, Arrais, Joel P.
Published in Computers in biology and medicine (01.09.2023)
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Handling Noise in Protein Interaction Networks
Arrais, Joel P., Oliveira, José Luís, Coelho, Edgar D., Correia, Fernanda B.
Published in BioMed research international (2019)
Published in BioMed research international (2019)
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Parallel DNA pyrosequencing unveils new zebrafish microRNAs
Soares, Ana R, Pereira, Patrícia M, Santos, Bruno, Egas, Conceição, Gomes, Ana C, Arrais, Joel, Oliveira, José L, Moura, Gabriela R, Santos, Manuel A S
Published in BMC genomics (27.04.2009)
Published in BMC genomics (27.04.2009)
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Can tricuspid annuloplasty of the donor heart reduce valve insufficiency following cardiac transplantation with bicaval anastomosis?
Fiorelli, Alfredo I, Oliveira, José L, Santos, Ronaldo H B, Coelho, Guilherme B, Oliveira, Adriana S, Lourenço-Filho, Domingos D, Lapenna, Gisele, Dias, Ricardo R, Bacal, Fernando, Bocchi, Edimar A, Stolf, Noedir A G
Published in The Heart surgery forum (01.06.2010)
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Improving the accuracy of recombinant protein production through integration of bioinformatics, statistical and mass spectrometry methodologies
Ragionieri, Lapo, Vitorino, Rui, Frommlet, Joerg, Oliveira, José L, Gaspar, Paulo, Ribas de Pouplana, Lluís, Santos, Manuel A. Silva, Moura, Gabriela Ribeiro
Published in The FEBS journal (01.02.2015)
Published in The FEBS journal (01.02.2015)
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A Reliable and Secure Method for Sharing Genomic Data
Cruz, Dinis B, Almeida, João R, Silva, Jorge M, Oliveira, José L
Published in Studies in health technology and informatics (18.05.2023)
Published in Studies in health technology and informatics (18.05.2023)
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Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure
Moura, Gabriela, Pinheiro, Miguel, Arrais, Joel, Gomes, Ana Cristina, Carreto, Laura, Freitas, Adelaide, Oliveira, José L, Santos, Manuel A S
Published in PloS one (05.09.2007)
Published in PloS one (05.09.2007)
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Automatic filtering and substantiation of drug safety signals
Bauer-Mehren, Anna, van Mullingen, Erik M, Avillach, Paul, Carrascosa, María Del Carmen, Garcia-Serna, Ricard, Piñero, Janet, Singh, Bharat, Lopes, Pedro, Oliveira, José L, Diallo, Gayo, Ahlberg Helgee, Ernst, Boyer, Scott, Mestres, Jordi, Sanz, Ferran, Kors, Jan A, Furlong, Laura I
Published in PLoS computational biology (01.04.2012)
Published in PLoS computational biology (01.04.2012)
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GTO: A toolkit to unify pipelines in genomic and proteomic research
Almeida, João R., Pinho, Armando J., Oliveira, José L., Fajarda, Olga, Pratas, Diogo
Published in SoftwareX (01.07.2020)
Published in SoftwareX (01.07.2020)
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Species-specific codon context rules unveil non-neutrality effects of synonymous mutations
Moura, Gabriela R, Pinheiro, Miguel, Freitas, Adelaide, Oliveira, José L, Frommlet, Jörg C, Carreto, Laura, Soares, Ana R, Bezerra, Ana R, Santos, Manuel A S
Published in PloS one (26.10.2011)
Published in PloS one (26.10.2011)
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Correction to: Designing optimized drug candidates with Generative Adversarial Network
Abbasi, Maryam, Santos, Beatriz P., Pereira, Tiago C., Sofa, Raul, Monteiro, Nelson R. C., Simões, Carlos J. V., Brito, Rui M. M., Ribeiro, Bernardete, Oliveira, José L., Arrais, Joel P.
Published in Journal of cheminformatics (11.08.2022)
Published in Journal of cheminformatics (11.08.2022)
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Conduction-radiation heat transfer in non-gray semi-transparent planar media: Combining integral transforms and discrete ordinate method
de Lima, João A., da Silva, Zaqueu E., de Oliveira, José Vanderlan L.
Published in Journal of quantitative spectroscopy & radiative transfer (01.10.2024)
Published in Journal of quantitative spectroscopy & radiative transfer (01.10.2024)
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An Overview of Biomolecular Event Extraction from Scientific Documents
Oliveira, José Luís, González, Fabio, Matos, Sérgio, Vanegas, Jorge A.
Published in Computational and mathematical methods in medicine (01.01.2015)
Published in Computational and mathematical methods in medicine (01.01.2015)
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