Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions
Kajitani, Rei, Yoshimura, Dai, Okuno, Miki, Minakuchi, Yohei, Kagoshima, Hiroshi, Fujiyama, Asao, Kubokawa, Kaoru, Kohara, Yuji, Toyoda, Atsushi, Itoh, Takehiko
Published in Nature communications (12.04.2019)
Published in Nature communications (12.04.2019)
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Journal Article
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
Kajitani, Rei, Toshimoto, Kouta, Noguchi, Hideki, Toyoda, Atsushi, Ogura, Yoshitoshi, Okuno, Miki, Yabana, Mitsuru, Harada, Masayuki, Nagayasu, Eiji, Maruyama, Haruhiko, Kohara, Yuji, Fujiyama, Asao, Hayashi, Tetsuya, Itoh, Takehiko
Published in Genome research (01.08.2014)
Published in Genome research (01.08.2014)
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Journal Article
Targeted base editing in the plastid genome of Arabidopsis thaliana
Nakazato, Issei, Okuno, Miki, Yamamoto, Hiroshi, Tamura, Yoshiko, Itoh, Takehiko, Shikanai, Toshiharu, Takanashi, Hideki, Tsutsumi, Nobuhiro, Arimura, Shin-ichi
Published in Nature plants (01.07.2021)
Published in Nature plants (01.07.2021)
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Journal Article
Evolutionary History of Sexual Differentiation Mechanism in Insects
Chikami, Yasuhiko, Okuno, Miki, Toyoda, Atsushi, Itoh, Takehiko, Niimi, Teruyuki
Published in Molecular biology and evolution (01.07.2022)
Published in Molecular biology and evolution (01.07.2022)
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Journal Article
Targeted gene disruption of ATP synthases 6‐1 and 6‐2 in the mitochondrial genome of Arabidopsis thaliana by mitoTALENs
Arimura, Shin‐ichi, Ayabe, Hiroki, Sugaya, Hajime, Okuno, Miki, Tamura, Yoshiko, Tsuruta, Yu, Watari, Yuta, Yanase, Shungo, Yamauchi, Takaki, Itoh, Takehiko, Toyoda, Atsushi, Takanashi, Hideki, Tsutsumi, Nobuhiro
Published in The Plant journal : for cell and molecular biology (01.12.2020)
Published in The Plant journal : for cell and molecular biology (01.12.2020)
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Journal Article
Expression profiling of sexually dimorphic genes in the Japanese quail, Coturnix japonica
Okuno, Miki, Miyamoto, Shuntaro, Itoh, Takehiko, Seki, Masahide, Suzuki, Yutaka, Mizushima, Shusei, Kuroiwa, Asato
Published in Scientific reports (30.11.2020)
Published in Scientific reports (30.11.2020)
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Journal Article
Curing cytoplasmic male sterility via TALEN-mediated mitochondrial genome editing
Kazama, Tomohiko, Okuno, Miki, Watari, Yuta, Yanase, Shungo, Koizuka, Chie, Tsuruta, Yu, Sugaya, Hajime, Toyoda, Atsushi, Itoh, Takehiko, Tsutsumi, Nobuhiro, Toriyama, Kinya, Koizuka, Nobuya, Arimura, Shin-Ichi
Published in Nature plants (01.07.2019)
Published in Nature plants (01.07.2019)
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Journal Article
Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles
Ando, Toshiya, Matsuda, Takeshi, Goto, Kumiko, Hara, Kimiko, Ito, Akinori, Hirata, Junya, Yatomi, Joichiro, Kajitani, Rei, Okuno, Miki, Yamaguchi, Katsushi, Kobayashi, Masaaki, Takano, Tomoyuki, Minakuchi, Yohei, Seki, Masahide, Suzuki, Yutaka, Yano, Kentaro, Itoh, Takehiko, Shigenobu, Shuji, Toyoda, Atsushi, Niimi, Teruyuki
Published in Nature communications (21.09.2018)
Published in Nature communications (21.09.2018)
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Journal Article
Analysis of Sex Chromosome Evolution in the Clade Palaeognathae from Phased Genome Assembly
Okuno, Miki, Mizushima, Shusei, Kuroiwa, Asato, Itoh, Takehiko
Published in Genome biology and evolution (05.11.2021)
Published in Genome biology and evolution (05.11.2021)
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Journal Article
Mining RNA‐seq data reveals the massive regulon of GcvB small RNA and its physiological significance in maintaining amino acid homeostasis in Escherichia coli
Miyakoshi, Masatoshi, Okayama, Haruna, Lejars, Maxence, Kanda, Takeshi, Tanaka, Yuki, Itaya, Kaori, Okuno, Miki, Itoh, Takehiko, Iwai, Noritaka, Wachi, Masaaki
Published in Molecular microbiology (01.01.2022)
Published in Molecular microbiology (01.01.2022)
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Journal Article
Helicobacter kumamotonensis sp. nov., isolated from human clinical specimens
Kawamura, Yoshiaki, Fujimoto, Yuko, Kutsuna, Ryo, Tomida, Junko, Yamamoto, Kei-Ichi, Miyoshi-Akiyama, Tohru, Okuno, Miki, Ogura, Yoshitoshi, Matsuoka, Masao, Kawaguchi, Tatusya, Tsutsuki, Hiroyasu, Sawa, Tomohiro
Published in International journal of systematic and evolutionary microbiology (15.03.2023)
Published in International journal of systematic and evolutionary microbiology (15.03.2023)
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Escherichia cryptic clade I is an emerging source of human intestinal pathogens
Okuno, Miki, Arimizu, Yoko, Miyahara, Seina, Wakabayashi, Yuki, Gotoh, Yasuhiro, Yoshino, Shuji, Harada, Tetsuya, Seto, Kazuko, Yamamoto, Takeshi, Nakamura, Keiji, Hayashi, Tetsuya, Ogura, Yoshitoshi
Published in BMC biology (13.04.2023)
Published in BMC biology (13.04.2023)
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Journal Article
Isolation and Genomic Characterization of a Heat-Labile Enterotoxin 1-Producing Escherichia fergusonii Strain from a Human
Okuno, Miki, Tsuru, Nami, Yoshino, Shuji, Gotoh, Yasuhiro, Yamamoto, Takeshi, Hayashi, Tetsuya, Ogura, Yoshitoshi
Published in Microbiology spectrum (17.08.2023)
Published in Microbiology spectrum (17.08.2023)
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Journal Article
Elucidation of the speciation history of three sister species of crown-of-thorns starfish ( Acanthaster spp.) based on genomic analysis
Yuasa, Hideaki, Kajitani, Rei, Nakamura, Yuta, Takahashi, Kazuki, Okuno, Miki, Kobayashi, Fumiya, Shinoda, Takahiro, Toyoda, Atsushi, Suzuki, Yutaka, Thongtham, Nalinee, Forsman, Zac, Bronstein, Omri, Seveso, Davide, Montalbetti, Enrico, Taquet, Coralie, Eyal, Gal, Yasuda, Nina, Itoh, Takehiko
Published in DNA research (01.08.2021)
Published in DNA research (01.08.2021)
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Chromosomal-level assembly of Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki genomes
Okuno, Miki, Mochimaru, Yuta, Matsuoka, Kentaro, Yamabe, Takahiro, Matiz-Ceron, Luisa, Jogahara, Takamichi, Toyoda, Atsushi, Kuroiwa, Asato, Itoh, Takehiko
Published in Scientific data (21.12.2023)
Published in Scientific data (21.12.2023)
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Genomic characterization of endemic diarrheagenic Escherichia coli and Escherichia albertii from infants with diarrhea in Vietnam
Iguchi, Atsushi, Takemura, Taichiro, Ogura, Yoshitoshi, Nguyen, Thi Thu Huong, Kikuchi, Taisei, Okuno, Miki, Tokizawa, Asako, Iwashita, Hanako, Pham, Hong Quynh Anh, Doan, Thi Hang, Tran, Na Ly, Tran, Thi Luong, Nguyen, Thi Hang, Tran, Thi Hien, Pham, Tuyet Ngoc Linh, Dao, Trung Duc, Vu, Thi My Hanh, Nguyen, Thi Nga, Vu, Hieu, Nguyen, Van Trang, Vu, Thi Thu Huong, Le, Thanh Huong, Lai, Tuan Anh, Ngo, Tuan Cuong, Hasebe, Futoshi, Nguyen, Dong Tu, Yamashiro, Tetsu
Published in PLoS neglected tropical diseases (01.04.2023)
Published in PLoS neglected tropical diseases (01.04.2023)
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Journal Article
Targeted base editing in the mitochondrial genome of Arabidopsis thaliana
Nakazato, Issei, Okuno, Miki, Zhou, Chang, Itoh, Takehiko, Tsutsumi, Nobuhiro, Takenaka, Mizuki, Arimura, Shin-Ichi
Published in Proceedings of the National Academy of Sciences - PNAS (17.05.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (17.05.2022)
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