Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes
Oyola, Samuel O, Otto, Thomas D, Gu, Yong, Maslen, Gareth, Manske, Magnus, Campino, Susana, Turner, Daniel J, Macinnis, Bronwyn, Kwiatkowski, Dominic P, Swerdlow, Harold P, Quail, Michael A
Published in BMC genomics (03.01.2012)
Published in BMC genomics (03.01.2012)
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A method for selectively enriching microbial DNA from contaminating vertebrate host DNA
Feehery, George R, Yigit, Erbay, Oyola, Samuel O, Langhorst, Bradley W, Schmidt, Victor T, Stewart, Fiona J, Dimalanta, Eileen T, Amaral-Zettler, Linda A, Davis, Theodore, Quail, Michael A, Pradhan, Sriharsa
Published in PloS one (28.10.2013)
Published in PloS one (28.10.2013)
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Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals
Böhme, Ulrike, Otto, Thomas D, Cotton, James A, Steinbiss, Sascha, Sanders, Mandy, Oyola, Samuel O, Nicot, Antoine, Gandon, Sylvain, Patra, Kailash P, Herd, Colin, Bushell, Ellen, Modrzynska, Katarzyna K, Billker, Oliver, Vinetz, Joseph M, Rivero, Ana, Newbold, Chris I, Berriman, Matthew
Published in Genome research (01.04.2018)
Published in Genome research (01.04.2018)
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Save lives in the next pandemic: ensure vaccine equity now
Carlson, Colin, Becker, Daniel, Happi, Christian, O’Donoghue, Zoe, de Oliveira, Tulio, Oyola, Samuel O., Poisot, Timothée, Seifert, Stephanie, Phelan, Alexandra
Published in Nature (London) (29.02.2024)
Published in Nature (London) (29.02.2024)
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Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment
Juma, John, Fonseca, Vagner, Konongoi, Samson L, van Heusden, Peter, Roesel, Kristina, Sang, Rosemary, Bett, Bernard, Christoffels, Alan, de Oliveira, Tulio, Oyola, Samuel O
Published in BMC genomics (18.07.2022)
Published in BMC genomics (18.07.2022)
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Access to ultra-long IgG CDRH3 bovine antibody sequences using short read sequencing technology
Oyola, Samuel O., Henson, Sonal P., Nzau, Benjamin, Kibwana, Elizabeth, Nene, Vishvanath
Published in Molecular immunology (01.11.2021)
Published in Molecular immunology (01.11.2021)
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Whole metagenome sequencing of cecum microbiomes in Ethiopian indigenous chickens from two different altitudes reveals antibiotic resistance genes
Kumar, Himansu, Park, Woncheoul, Lim, Dajeong, Srikanth, Krishnamoorthy, Kim, Jun-Mo, Jia, Xin-Zheng, Han, Jian-Lin, Hanotte, Olivier, Park, Jong-Eun, Oyola, Samuel O.
Published in Genomics (San Diego, Calif.) (01.03.2020)
Published in Genomics (San Diego, Calif.) (01.03.2020)
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Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria
Otto, Thomas D., Gilabert, Aude, Crellen, Thomas, Böhme, Ulrike, Arnathau, Céline, Sanders, Mandy, Oyola, Samuel O., Okouga, Alain Prince, Boundenga, Larson, Willaume, Eric, Ngoubangoye, Barthélémy, Moukodoum, Nancy Diamella, Paupy, Christophe, Durand, Patrick, Rougeron, Virginie, Ollomo, Benjamin, Renaud, François, Newbold, Chris, Berriman, Matthew, Prugnolle, Franck
Published in Nature microbiology (01.06.2018)
Published in Nature microbiology (01.06.2018)
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Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification
Oyola, Samuel O, Ariani, Cristina V, Hamilton, William L, Kekre, Mihir, Amenga-Etego, Lucas N, Ghansah, Anita, Rutledge, Gavin G, Redmond, Seth, Manske, Magnus, Jyothi, Dushyanth, Jacob, Chris G, Otto, Thomas D, Rockett, Kirk, Newbold, Chris I, Berriman, Matthew, Kwiatkowski, Dominic P
Published in Malaria journal (20.12.2016)
Published in Malaria journal (20.12.2016)
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Journal Article
Optimal enzymes for amplifying sequencing libraries
Quail, Michael A, Otto, Thomas D, Gu, Yong, Harris, Simon R, Skelly, Thomas F, McQuillan, Jacqueline A, Swerdlow, Harold P, Oyola, Samuel O
Published in Nature methods (01.01.2012)
Published in Nature methods (01.01.2012)
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A pan-African pathogen genomics data sharing platform to support disease outbreaks
Christoffels, Alan, Mboowa, Gerald, van Heusden, Peter, Makhubela, Sello, Githinji, George, Mwangi, Sarah, Onywera, Harris, Nnaemeka, Ndodo, Amoako, Daniel Gyamfi, Olawoye, Idowu, Diallo, Amadou, Mbala-Kingebeni, Placide, Oyola, Samuel O., Adu, Bright, Mvelase, Christopher, Ondoa, Pascale, Dratibi, Fred Athanasius, Sow, Abdourahmane, Gumede, Nicksy, Tessema, Sofonias K., Ouma, Ahmed Ogwell, Tebeje, Yenew Kebede
Published in Nature medicine (01.05.2023)
Published in Nature medicine (01.05.2023)
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Journal Article
Genome characterization of Rift Valley fever virus isolated from cattle, goats and sheep during interepidemic periods in Kenya
Onwongá, Amos A, Oyola, Samuel O, Juma, John, Konongoi, Samson, Nyamota, Richard, Mwangi, Reuben, Muli, Collins, Dobi, Paul, Bett, Bernard B, Ongus, Juliette R
Published in BMC veterinary research (23.08.2024)
Published in BMC veterinary research (23.08.2024)
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Genomic Epidemiology of Rift Valley Fever Virus Involved in the 2018 and 2022 Outbreaks in Livestock in Rwanda
Nsengimana, Isidore, Juma, John, Roesel, Kristina, Gasana, Methode N, Ndayisenga, Fabrice, Muvunyi, Claude M, Hakizimana, Emmanuel, Hakizimana, Jean N, Eastwood, Gillian, Chengula, Augustino A, Bett, Bernard, Kasanga, Christopher J, Oyola, Samuel O
Published in Viruses (01.07.2024)
Published in Viruses (01.07.2024)
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Whole-genome sequencing of SARS-CoV-2 reveals diverse mutations in circulating Alpha and Delta variants during the first, second, and third waves of COVID-19 in South Kivu, east of the Democratic Republic of the Congo
Ntagereka, Patrick Bisimwa, Oyola, Samuel O., Baenyi, Simon Patrick, Rono, Gilbert Kibet, Birindwa, Ahadi Bwihangane, Shukuru, Dieudonné Wasso, Baharanyi, Tshass Chasinga, Kashosi, Théophile Mitima, Buhendwa, Jean-Paul Cikwanine, Bisimwa, Parvine Basimane, Kusinza, Aline Byabene, Basengere, Rodrigue Ayagirwe, Mukwege, Denis
Published in International journal of infectious diseases (01.09.2022)
Published in International journal of infectious diseases (01.09.2022)
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Altitude-dependent agro-ecologies impact the microbiome diversity of scavenging indigenous chicken in Ethiopia
Glendinning, Laura, Jia, Xinzheng, Kebede, Adebabay, Oyola, Samuel O, Park, Jong-Eun, Park, Woncheoul, Assiri, Abdulwahab, Holm, Jacob Bak, Kristiansen, Karsten, Han, Jianlin, Hanotte, Olivier
Published in Microbiome (23.07.2024)
Published in Microbiome (23.07.2024)
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Rapid CRISPR/Cas9 Editing of Genotype IX African Swine Fever Virus Circulating in Eastern and Central Africa
Abkallo, Hussein M., Svitek, Nicholas, Oduor, Bernard, Awino, Elias, Henson, Sonal P., Oyola, Samuel O., Mwalimu, Stephen, Assad-Garcia, Nacrya, Fuchs, Walter, Vashee, Sanjay, Steinaa, Lucilla
Published in Frontiers in genetics (30.08.2021)
Published in Frontiers in genetics (30.08.2021)
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Metagenomic characterization reveals virus coinfections associated with Newcastle disease virus among poultry in Kenya
Panyako, Philip M., Ommeh, Sheila C., Kuria, Stephen N., Lichoti, Jacqueline K., Musina, Johns, Nair, Venugopal, Nene, Vish, Oyola, Samuel O., Munir, Muhammad
Published in Journal of basic microbiology (01.12.2023)
Published in Journal of basic microbiology (01.12.2023)
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Journal Article
Complete Genome Sequencing and Comparative Phylogenomics of Nine African Swine Fever Virus (ASFV) Isolates of the Virulent East African p72 Genotype IX without Viral Sequence Enrichment
Domelevo Entfellner, Jean-Baka, Okoth, Edward Abworo, Onzere, Cynthia Kavulani, Upton, Chris, Njau, Emma Peter, Höper, Dirk, Henson, Sonal P, Oyola, Samuel O, Bochere, Edwina, Machuka, Eunice M, Bishop, Richard P
Published in Viruses (01.09.2024)
Published in Viruses (01.09.2024)
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Comparative genomic analysis of three Leishmania species that cause diverse human disease
Ivens, Alasdair, Peacock, Christopher S, Carver, Tim, Thurston, Scott, Tivey, Adrian, Chillingworth, Tracey, Baldauf, Sandra L, Smith, Deborah F, Oyola, Samuel O, Faulconbridge, Adam, Barrell, Barclay, Brito, Loislene O, Jeffares, Daniel, Arrowsmith, Claire, Jagels, Kay, Norbertczak, Halina, Squares, Rob, Whitehead, Sally, Rajandream, Marie-Adele, Cruz, Angela K, Tosi, Luiz R O, Ormond, Doug, Hance, Zahra, Seeger, Kathy, Peters, Nick, Mottram, Jeremy C, White, Brian, Moule, Sharon, Murphy, Lee, Depledge, Daniel P, Harris, David, Berriman, Matthew, Hilley, James D, Fraser, Audrey, Rabbinowitsch, Ester, Bringaud, Frédéric, Ruiz, Jeronimo C, Quail, Michael A, Kerhornou, Arnaud, Rutter, Simon, Aslett, Martin, Adlem, Ellen
Published in Nature genetics (01.07.2007)
Published in Nature genetics (01.07.2007)
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Metagenomic Characterization of Poultry Cloacal and Oropharyngeal Swabs in Kenya Reveals Bacterial Pathogens and Their Antimicrobial Resistance Genes
Panyako, Philip M., Ommeh, Sheila C., Kuria, Stephen N., Lichoti, Jacqueline K., Musina, Johns, Nair, Venugopal, Nene, Vish, Munir, Muhammad, Oyola, Samuel O.
Published in International journal of microbiology (12.02.2024)
Published in International journal of microbiology (12.02.2024)
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