REAPR: a universal tool for genome assembly evaluation
Hunt, Martin, Kikuchi, Taisei, Sanders, Mandy, Newbold, Chris, Berriman, Matthew, Otto, Thomas D
Published in Genome biology (27.05.2013)
Published in Genome biology (27.05.2013)
Get full text
Journal Article
A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
Quail, Michael A, Smith, Miriam, Coupland, Paul, Otto, Thomas D, Harris, Simon R, Connor, Thomas R, Bertoni, Anna, Swerdlow, Harold P, Gu, Yong
Published in BMC genomics (24.07.2012)
Published in BMC genomics (24.07.2012)
Get full text
Journal Article
Circlator: automated circularization of genome assemblies using long sequencing reads
Hunt, Martin, Silva, Nishadi De, Otto, Thomas D, Parkhill, Julian, Keane, Jacqueline A, Harris, Simon R
Published in Genome Biology (29.12.2015)
Published in Genome Biology (29.12.2015)
Get full text
Journal Article
Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis
Alivernini, Stefano, MacDonald, Lucy, Elmesmari, Aziza, Finlay, Samuel, Tolusso, Barbara, Gigante, Maria Rita, Petricca, Luca, Di Mario, Clara, Bui, Laura, Perniola, Simone, Attar, Moustafa, Gessi, Marco, Fedele, Anna Laura, Chilaka, Sabarinadh, Somma, Domenico, Sansom, Stephen N, Filer, Andrew, McSharry, Charles, Millar, Neal L, Kirschner, Kristina, Nerviani, Alessandra, Lewis, Myles J, Pitzalis, Costantino, Clark, Andrew R, Ferraccioli, Gianfranco, Udalova, Irina, Buckley, Christopher D, Gremese, Elisa, McInnes, Iain B, Otto, Thomas D, Kurowska-Stolarska, Mariola
Published in Nature medicine (01.08.2020)
Published in Nature medicine (01.08.2020)
Get full text
Journal Article
Generation of antigenic diversity in Plasmodium falciparum by structured rearrangement of Var genes during mitosis
Claessens, Antoine, Hamilton, William L, Kekre, Mihir, Otto, Thomas D, Faizullabhoy, Adnan, Rayner, Julian C, Kwiatkowski, Dominic
Published in PLoS genetics (01.12.2014)
Published in PLoS genetics (01.12.2014)
Get full text
Journal Article
Extreme mutation bias and high AT content in Plasmodium falciparum
Hamilton, William L, Claessens, Antoine, Otto, Thomas D, Kekre, Mihir, Fairhurst, Rick M, Rayner, Julian C, Kwiatkowski, Dominic
Published in Nucleic acids research (28.02.2017)
Published in Nucleic acids research (28.02.2017)
Get full text
Journal Article
Principles of multisensory behavior
Otto, Thomas U, Dassy, Brice, Mamassian, Pascal
Published in The Journal of neuroscience (24.04.2013)
Published in The Journal of neuroscience (24.04.2013)
Get full text
Journal Article
Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes
Oyola, Samuel O, Otto, Thomas D, Gu, Yong, Maslen, Gareth, Manske, Magnus, Campino, Susana, Turner, Daniel J, Macinnis, Bronwyn, Kwiatkowski, Dominic P, Swerdlow, Harold P, Quail, Michael A
Published in BMC genomics (03.01.2012)
Published in BMC genomics (03.01.2012)
Get full text
Journal Article
Single-cell transcriptomic analysis of bloodstream Trypanosoma brucei reconstructs cell cycle progression and developmental quorum sensing
Briggs, Emma M, Rojas, Federico, McCulloch, Richard, Matthews, Keith R, Otto, Thomas D
Published in Nature communications (06.09.2021)
Published in Nature communications (06.09.2021)
Get full text
Journal Article
Annotation and visualization of parasite, fungi and arthropod genomes with Companion
Haese-Hill, William, Crouch, Kathryn, Otto, Thomas D
Published in Nucleic acids research (05.07.2024)
Published in Nucleic acids research (05.07.2024)
Get full text
Journal Article
Uncovering the essential genes of the human malaria parasite Plasmodium falciparum by saturation mutagenesis
Zhang, Min, Wang, Chengqi, Otto, Thomas D, Oberstaller, Jenna, Liao, Xiangyun, Adapa, Swamy R, Udenze, Kenneth, Bronner, Iraad F, Casandra, Deborah, Mayho, Matthew, Brown, Jacqueline, Li, Suzanne, Swanson, Justin, Rayner, Julian C, Jiang, Rays H Y, Adams, John H
Published in Science (American Association for the Advancement of Science) (04.05.2018)
Published in Science (American Association for the Advancement of Science) (04.05.2018)
Get full text
Journal Article
Predicting crypto‐currencies using sparse non‐Gaussian state space models
Hotz‐Behofsits, Christian, Huber, Florian, Zörner, Thomas Otto
Published in Journal of forecasting (01.09.2018)
Published in Journal of forecasting (01.09.2018)
Get full text
Journal Article
RATT: Rapid Annotation Transfer Tool
Otto, Thomas D, Dillon, Gary P, Degrave, Wim S, Berriman, Matthew
Published in Nucleic acids research (01.05.2011)
Published in Nucleic acids research (01.05.2011)
Get full text
Journal Article
peaks2utr: a robust Python tool for the annotation of 3′ UTRs
Haese-Hill, William, Crouch, Kathryn, Otto, Thomas D
Published in Bioinformatics (Oxford, England) (01.03.2023)
Published in Bioinformatics (Oxford, England) (01.03.2023)
Get full text
Journal Article
ProteinsPlus: a web portal for structure analysis of macromolecules
Fährrolfes, Rainer, Bietz, Stefan, Flachsenberg, Florian, Meyder, Agnes, Nittinger, Eva, Otto, Thomas, Volkamer, Andrea, Rarey, Matthias
Published in Nucleic acids research (03.07.2017)
Published in Nucleic acids research (03.07.2017)
Get full text
Journal Article
Using topic modeling to detect cellular crosstalk in scRNA-seq
Pancheva, Alexandrina, Wheadon, Helen, Rogers, Simon, Otto, Thomas D
Published in PLoS computational biology (01.04.2022)
Published in PLoS computational biology (01.04.2022)
Get full text
Journal Article
A comprehensive evaluation of assembly scaffolding tools
Hunt, Martin, Newbold, Chris, Berriman, Matthew, Otto, Thomas D
Published in Genome biology (03.03.2014)
Published in Genome biology (03.03.2014)
Get full text
Journal Article