High-throughput DNA sequencing to survey bacterial histidine and tyrosine decarboxylases in raw milk cheeses
O'Sullivan, Daniel J, Fallico, Vincenzo, O'Sullivan, Orla, McSweeney, Paul L H, Sheehan, Jeremiah J, Cotter, Paul D, Giblin, Linda
Published in BMC microbiology (17.11.2015)
Published in BMC microbiology (17.11.2015)
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Journal Article
N-3 Polyunsaturated Fatty Acids (PUFAs) Reverse the Impact of Early-Life Stress on the Gut Microbiota
Pusceddu, Matteo M, El Aidy, Sahar, Crispie, Fiona, O'Sullivan, Orla, Cotter, Paul, Stanton, Catherine, Kelly, Philip, Cryan, John F, Dinan, Timothy G
Published in PloS one (01.10.2015)
Published in PloS one (01.10.2015)
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Journal Article
Sequencing-based analysis of the bacterial and fungal composition of kefir grains and milks from multiple sources
Marsh, Alan J, O'Sullivan, Orla, Hill, Colin, Ross, R Paul, Cotter, Paul D
Published in PloS one (19.07.2013)
Published in PloS one (19.07.2013)
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Journal Article
Impact of nisin on Clostridioides difficile and microbiota composition in a faecal fermentation model of the human colon
O’Reilly, Catherine, O’Connor, Paula M., O’Sullivan, Órla, Rea, Mary C., Hill, Colin, Ross, R. Paul
Published in Journal of applied microbiology (01.02.2022)
Published in Journal of applied microbiology (01.02.2022)
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Journal Article
Gut microbiota depletion from early adolescence in mice: Implications for brain and behaviour
Desbonnet, Lieve, Clarke, Gerard, Traplin, Alexander, O’Sullivan, Orla, Crispie, Fiona, Moloney, Rachel D, Cotter, Paul D, Dinan, Timothy G, Cryan, John F
Published in Brain, behavior, and immunity (01.08.2015)
Published in Brain, behavior, and immunity (01.08.2015)
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Journal Article
Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome
Yap, Min, Feehily, Conor, Walsh, Calum J., Fenelon, Mark, Murphy, Eileen F., McAuliffe, Fionnuala M., van Sinderen, Douwe, O’Toole, Paul W., O’Sullivan, Orla, Cotter, Paul D.
Published in Scientific reports (10.12.2020)
Published in Scientific reports (10.12.2020)
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Journal Article
Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir
Walsh, Aaron M, Crispie, Fiona, Kilcawley, Kieran, O'Sullivan, Orla, O'Sullivan, Maurice G, Claesson, Marcus J, Cotter, Paul D
Published in mSystems (01.09.2016)
Published in mSystems (01.09.2016)
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Journal Article
The Potential Impact of Probiotics on the Gut Microbiome of Athletes
Wosinska, Laura, Cotter, Paul D, O'Sullivan, Orla, Guinane, Caitriona
Published in Nutrients (21.09.2019)
Published in Nutrients (21.09.2019)
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Journal Article
Targeting the microbiota to address diet-induced obesity: a time dependent challenge
Clarke, Siobhan F, Murphy, Eileen F, O'Sullivan, Orla, Ross, R Paul, O'Toole, Paul W, Shanahan, Fergus, Cotter, Paul D
Published in PloS one (07.06.2013)
Published in PloS one (07.06.2013)
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Journal Article
Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera
Sun, Zhihong, Harris, Hugh M. B., McCann, Angela, Guo, Chenyi, Argimón, Silvia, Zhang, Wenyi, Yang, Xianwei, Jeffery, Ian B, Cooney, Jakki C., Kagawa, Todd F., Liu, Wenjun, Song, Yuqin, Salvetti, Elisa, Wrobel, Agnieszka, Rasinkangas, Pia, Parkhill, Julian, Rea, Mary C., O’Sullivan, Orla, Ritari, Jarmo, Douillard, François P., Paul Ross, R., Yang, Ruifu, Briner, Alexandra E., Felis, Giovanna E., de Vos, Willem M., Barrangou, Rodolphe, Klaenhammer, Todd R., Caufield, Page W., Cui, Yujun, Zhang, Heping, O’Toole, Paul W.
Published in Nature communications (29.09.2015)
Published in Nature communications (29.09.2015)
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Journal Article
Nisin J, a Novel Natural Nisin Variant, Is Produced by Staphylococcus capitis Sourced from the Human Skin Microbiota
O'Sullivan, Julie N, O'Connor, Paula M, Rea, Mary C, O'Sullivan, Orla, Walsh, Calum J, Healy, Brian, Mathur, Harsh, Field, Des, Hill, Colin, Ross, R Paul
Published in Journal of bacteriology (15.01.2020)
Published in Journal of bacteriology (15.01.2020)
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Journal Article
A Prospective Metagenomic and Metabolomic Analysis of the Impact of Exercise and/or Whey Protein Supplementation on the Gut Microbiome of Sedentary Adults
Cronin, Owen, Barton, Wiley, Skuse, Peter, Penney, Nicholas C, Garcia-Perez, Isabel, Murphy, Eileen F, Woods, Trevor, Nugent, Helena, Fanning, Aine, Melgar, Silvia, Falvey, Eanna C, Holmes, Elaine, Cotter, Paul D, O'Sullivan, Orla, Molloy, Michael G, Shanahan, Fergus
Published in mSystems (01.05.2018)
Published in mSystems (01.05.2018)
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Journal Article
Sequence-based analysis of the bacterial and fungal compositions of multiple kombucha (tea fungus) samples
Marsh, Alan J., O'Sullivan, Orla, Hill, Colin, Ross, R. Paul, Cotter, Paul D.
Published in Food microbiology (01.04.2014)
Published in Food microbiology (01.04.2014)
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Journal Article
Exercise and associated dietary extremes impact on gut microbial diversity
Clarke, Siobhan F, Murphy, Eileen F, O'Sullivan, Orla, Lucey, Alice J, Humphreys, Margaret, Hogan, Aileen, Hayes, Paula, O'Reilly, Maeve, Jeffery, Ian B, Wood-Martin, Ruth, Kerins, David M, Quigley, Eamonn, Ross, R Paul, O'Toole, Paul W, Molloy, Michael G, Falvey, Eanna, Shanahan, Fergus, Cotter, Paul D
Published in Gut (01.12.2014)
Published in Gut (01.12.2014)
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Journal Article
Bacteriocin Gene-Trait matching across the complete Lactobacillus Pan-genome
Collins, Fergus W. J., O’Connor, Paula M., O’Sullivan, Orla, Gómez-Sala, Beatriz, Rea, Mary C., Hill, Colin, Ross, R. Paul
Published in Scientific reports (14.06.2017)
Published in Scientific reports (14.06.2017)
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Journal Article
Nigral overexpression of α‐synuclein in a rat Parkinson’s disease model indicates alterations in the enteric nervous system and the gut microbiome
O’Donovan, Sarah M., Crowley, Erin K., Brown, Jillian R.‐M., O’Sullivan, Orla, O’Leary, Olivia F., Timmons, Suzanne, Nolan, Yvonne M., Clarke, David J., Hyland, Niall P., Joyce, Susan A., Sullivan, Aideen M., O'Neill, Cora
Published in Neurogastroenterology and motility (01.01.2020)
Published in Neurogastroenterology and motility (01.01.2020)
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Journal Article
The Athlete Gut Microbiome and its Relevance to Health and Performance: A Review
O’Brien, Marcus T., O’Sullivan, Orla, Claesson, Marcus J., Cotter, Paul D.
Published in Sports medicine (Auckland) (01.12.2022)
Published in Sports medicine (Auckland) (01.12.2022)
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Journal Article
Insights into the Adolescent Cystic Fibrosis Airway Microbiome Using Shotgun Metagenomics
McDermott, Gillian, Walsh, Aaron, Crispie, Fiona, Frost, Susanna, Greally, Peter, Cotter, Paul D, O'Sullivan, Orla, Renwick, Julie
Published in International journal of molecular sciences (01.04.2024)
Published in International journal of molecular sciences (01.04.2024)
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Journal Article