The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
Davis, James J, Wattam, Alice R, Aziz, Ramy K, Brettin, Thomas, Butler, Ralph, Butler, Rory M, Chlenski, Philippe, Conrad, Neal, Dickerman, Allan, Dietrich, Emily M, Gabbard, Joseph L, Gerdes, Svetlana, Guard, Andrew, Kenyon, Ronald W, Machi, Dustin, Mao, Chunhong, Murphy-Olson, Dan, Nguyen, Marcus, Nordberg, Eric K, Olsen, Gary J, Olson, Robert D, Overbeek, Jamie C, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Shukla, Maulik, Thomas, Chris, VanOeffelen, Margo, Vonstein, Veronika, Warren, Andrew S, Xia, Fangfang, Xie, Dawen, Yoo, Hyunseung, Stevens, Rick
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
Stereotactic Ablative Radiotherapy for the Comprehensive Treatment of Oligometastatic Cancers: Long-Term Results of the SABR-COMET Phase II Randomized Trial
Palma, David A, Olson, Robert, Harrow, Stephen, Gaede, Stewart, Louie, Alexander V, Haasbeek, Cornelis, Mulroy, Liam, Lock, Michael, Rodrigues, George B, Yaremko, Brian P, Schellenberg, Devin, Ahmad, Belal, Senthi, Sashendra, Swaminath, Anand, Kopek, Neil, Liu, Mitchell, Moore, Karen, Currie, Suzanne, Schlijper, Roel, Bauman, Glenn S, Laba, Joanna, Qu, X Melody, Warner, Andrew, Senan, Suresh
Published in Journal of clinical oncology (01.09.2020)
Published in Journal of clinical oncology (01.09.2020)
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Journal Article
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
Overbeek, Ross, Olson, Robert, Pusch, Gordon D, Olsen, Gary J, Davis, James J, Disz, Terry, Edwards, Robert A, Gerdes, Svetlana, Parrello, Bruce, Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R, Xia, Fangfang, Stevens, Rick
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR
Olson, Robert D, Assaf, Rida, Brettin, Thomas, Conrad, Neal, Cucinell, Clark, Davis, James J, Dempsey, Donald M, Dickerman, Allan, Dietrich, Emily M, Kenyon, Ronald W, Kuscuoglu, Mehmet, Lefkowitz, Elliot J, Lu, Jian, Machi, Dustin, Macken, Catherine, Mao, Chunhong, Niewiadomska, Anna, Nguyen, Marcus, Olsen, Gary J, Overbeek, Jamie C, Parrello, Bruce, Parrello, Victoria, Porter, Jacob S, Pusch, Gordon D, Shukla, Maulik, Singh, Indresh, Stewart, Lucy, Tan, Gene, Thomas, Chris, VanOeffelen, Margo, Vonstein, Veronika, Wallace, Zachary S, Warren, Andrew S, Wattam, Alice R, Xia, Fangfang, Yoo, Hyunseung, Zhang, Yun, Zmasek, Christian M, Scheuermann, Richard H, Stevens, Rick L
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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Journal Article
Trends in tuna carbon isotopes suggest global changes in pelagic phytoplankton communities
Lorrain, Anne, Pethybridge, Heidi, Cassar, Nicolas, Receveur, Aurore, Allain, Valérie, Bodin, Nathalie, Bopp, Laurent, Choy, C. Anela, Duffy, Leanne, Fry, Brian, Goñi, Nicolas, Graham, Brittany S., Hobday, Alistair J., Logan, John M., Ménard, Frederic, Menkes, Christophe E., Olson, Robert J., Pagendam, Dan E., Point, David, Revill, Andrew T., Somes, Christopher J., Young, Jock W.
Published in Global change biology (01.02.2020)
Published in Global change biology (01.02.2020)
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Journal Article
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
Brettin, Thomas, Davis, James J., Disz, Terry, Edwards, Robert A., Gerdes, Svetlana, Olsen, Gary J., Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D., Shukla, Maulik, Thomason, James A., Stevens, Rick, Vonstein, Veronika, Wattam, Alice R., Xia, Fangfang
Published in Scientific reports (10.02.2015)
Published in Scientific reports (10.02.2015)
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Journal Article
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
Wattam, Alice R, Davis, James J, Assaf, Rida, Boisvert, Sébastien, Brettin, Thomas, Bun, Christopher, Conrad, Neal, Dietrich, Emily M, Disz, Terry, Gabbard, Joseph L, Gerdes, Svetlana, Henry, Christopher S, Kenyon, Ronald W, Machi, Dustin, Mao, Chunhong, Nordberg, Eric K, Olsen, Gary J, Murphy-Olson, Daniel E, Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Shukla, Maulik, Vonstein, Veronika, Warren, Andrew, Xia, Fangfang, Yoo, Hyunseung, Stevens, Rick L
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
Predicting antimicrobial resistance using conserved genes
Nguyen, Marcus, Olson, Robert, Shukla, Maulik, VanOeffelen, Margo, Davis, James J
Published in PLoS computational biology (19.10.2020)
Published in PLoS computational biology (19.10.2020)
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Journal Article
A global meta-analysis of marine predator nitrogen stable isotopes: Relationships between trophic structure and environmental conditions
Pethybridge, Heidi, Choy, C. Anela, Logan, John M., Allain, Valerie, Lorrain, Anne, Bodin, Nathalie, Somes, Christopher J., Young, Jock, Ménard, Frederic, Langlais, Clothilde, Duffy, Leanne, Hobday, Alistair J., Kuhnert, Petra, Fry, Brian, Menkes, Christophe, Olson, Robert J.
Published in Global ecology and biogeography (01.09.2018)
Published in Global ecology and biogeography (01.09.2018)
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Journal Article
Physiological and ecological drivers of early spring blooms of a coastal phytoplankter
Hunter-Cevera, Kristen R., Neubert, Michael G., Olson, Robert J., Solow, Andrew R., Shalapyonok, Alexi, Sosik, Heidi M.
Published in Science (American Association for the Advancement of Science) (21.10.2016)
Published in Science (American Association for the Advancement of Science) (21.10.2016)
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Journal Article
PATRIC, the bacterial bioinformatics database and analysis resource
Wattam, Alice R, Abraham, David, Dalay, Oral, Disz, Terry L, Driscoll, Timothy, Gabbard, Joseph L, Gillespie, Joseph J, Gough, Roger, Hix, Deborah, Kenyon, Ronald, Machi, Dustin, Mao, Chunhong, Nordberg, Eric K, Olson, Robert, Overbeek, Ross, Pusch, Gordon D, Shukla, Maulik, Schulman, Julie, Stevens, Rick L, Sullivan, Daniel E, Vonstein, Veronika, Warren, Andrew, Will, Rebecca, Wilson, Meredith J C, Yoo, Hyun Seung, Zhang, Chengdong, Zhang, Yan, Sobral, Bruno W
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
Stereotactic ablative radiotherapy for the comprehensive treatment of 4-10 oligometastatic tumors (SABR-COMET-10): study protocol for a randomized phase III trial
Palma, David A, Olson, Robert, Harrow, Stephen, Correa, Rohann J M, Schneiders, Famke, Haasbeek, Cornelis J A, Rodrigues, George B, Lock, Michael, Yaremko, Brian P, Bauman, Glenn S, Ahmad, Belal, Schellenberg, Devin, Liu, Mitchell, Gaede, Stewart, Laba, Joanna, Mulroy, Liam, Senthi, Sashendra, Louie, Alexander V, Swaminath, Anand, Chalmers, Anthony, Warner, Andrew, Slotman, Ben J, de Gruijl, Tanja D, Allan, Alison, Senan, Suresh
Published in BMC cancer (19.08.2019)
Published in BMC cancer (19.08.2019)
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Journal Article
Progression-Free Survival and Local Control After SABR for up to 5 Oligometastases: An Analysis From the Population-Based Phase 2 SABR-5 Trial
Baker, Sarah, Jiang, Will, Mou, Benjamin, Lund, Chad R., Liu, Mitchell, Bergman, Alanah M., Schellenberg, Devin, Alexander, Abraham S., Carolan, Hannah, Atrchian, Siavash, Chng, Nick, Matthews, Quinn, Arbour, Gregory, Benny, Alexander, Tyldesley, Scott, Olson, Robert A.
Published in International journal of radiation oncology, biology, physics (15.11.2022)
Published in International journal of radiation oncology, biology, physics (15.11.2022)
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Journal Article
Anxiety after diagnosis predicts lung-cancer specific and overall survival in patients with stage III non-small cell lung cancer. A population-based cohort study
Vodermaier, Andrea, Ph.D, Lucas, Sarah, M.D, Linden, Wolfgang, Ph.D, Olson, Robert, M.D., F.R.C.P.C., M.Sc
Published in Journal of pain and symptom management (01.06.2017)
Published in Journal of pain and symptom management (01.06.2017)
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Journal Article
Nitrogen isotopic baselines and implications for estimating foraging habitat and trophic position of yellowfin tuna in the Indian and Pacific Oceans
Lorrain, Anne, Graham, Brittany S., Popp, Brian N., Allain, Valérie, Olson, Robert J., Hunt, Brian P.V., Potier, Michel, Fry, Brian, Galván-Magaña, Felipe, Menkes, Christophe E.R., Kaehler, Sven, Ménard, Frédéric
Published in Deep-sea research. Part II, Topical studies in oceanography (01.03.2015)
Published in Deep-sea research. Part II, Topical studies in oceanography (01.03.2015)
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Journal Article
The trophodynamics of marine top predators: Current knowledge, recent advances and challenges
Young, Jock W., Hunt, Brian P.V., Cook, Timothée R., Llopiz, Joel K., Hazen, Elliott L., Pethybridge, Heidi R., Ceccarelli, Daniela, Lorrain, Anne, Olson, Robert J., Allain, Valerie, Menkes, Christophe, Patterson, Toby, Nicol, Simon, Lehodey, Patrick, Kloser, Rudy J., Arrizabalaga, Haritz, Anela Choy, C.
Published in Deep-sea research. Part II, Topical studies in oceanography (01.03.2015)
Published in Deep-sea research. Part II, Topical studies in oceanography (01.03.2015)
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Journal Article
Comparative analysis of electrodermal activity metrics and their association with child behavior in autism spectrum disorder
Greenlee, Jessica L., Lorang, Emily, Olson, Robert H., Rodriquez, Geovanna, Yoon, Dasoo Milton, Hartley, Sigan
Published in Developmental psychobiology (01.02.2024)
Published in Developmental psychobiology (01.02.2024)
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Journal Article
Global data set for nitrogen and carbon stable isotopes of tunas
Bodin, Nathalie, Pethybridge, Heidi, Duffy, Leanne M, Lorrain, Anne, Allain, Valérie, Logan, John M, Ménard, Frédéric, Graham, Brittany, Choy, C Anela, Somes, Christopher J, Olson, Robert J, Young, Jock W
Published in Ecology (Durham) (01.03.2021)
Published in Ecology (Durham) (01.03.2021)
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Journal Article
Dynamics and functional diversity of the smallest phytoplankton on the Northeast US Shelf
Fowler, Bethany L., Neubert, Michael G., Hunter-Cevera, Kristen R., Olson, Robert J., Shalapyonok, Alexi, Solow, Andrew R., Sosik, Heidi M.
Published in Proceedings of the National Academy of Sciences - PNAS (02.06.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (02.06.2020)
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Journal Article
Association between nutritional risk index and outcomes for head and neck cancer patients receiving concurrent chemo‐radiotherapy
Oh, Justin, Liu, Alvin, Tran, Eric, Berthelet, Eric, Wu, Jonn, Olson, Robert A., Chau, Nicole, Bowman, Angie, Hamilton, Sarah N.
Published in Head & neck (01.09.2020)
Published in Head & neck (01.09.2020)
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Journal Article