Phosphate release coupled to rotary motion of F₁-ATPase
Okazaki, Kei-ichi, Hummer, Gerhard
Published in Proceedings of the National Academy of Sciences - PNAS (08.10.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (08.10.2013)
Get full text
Journal Article
Molecular mechanism on forcible ejection of ATPase inhibitory factor 1 from mitochondrial ATP synthase
Kobayashi, Ryohei, Ueno, Hiroshi, Okazaki, Kei-ichi, Noji, Hiroyuki
Published in Nature communications (31.03.2023)
Published in Nature communications (31.03.2023)
Get full text
Journal Article
Elasticity, friction, and pathway of γ-subunit rotation in FₒF₁-ATP synthase
Okazaki, Kei-ichi, Hummer, Gerhard
Published in Proceedings of the National Academy of Sciences - PNAS (25.08.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (25.08.2015)
Get full text
Journal Article
Transition path sampling of rare events by shooting from the top
Jung, Hendrik, Okazaki, Kei-ichi, Hummer, Gerhard
Published in The Journal of chemical physics (21.10.2017)
Published in The Journal of chemical physics (21.10.2017)
Get full text
Journal Article
Protein folds vs. protein folding: Differing questions, different challenges
Chen, Shi-Jie, Hassan, Mubashir, Jernigan, Robert L., Jia, Kejue, Kihara, Daisuke, Kloczkowski, Andrzej, Kotelnikov, Sergei, Kozakov, Dima, Liang, Jie, Liwo, Adam, Matysiak, Silvina, Meller, Jarek, Micheletti, Cristian, Mitchell, Julie C., Mondal, Sayantan, Nussinov, Ruth, Okazaki, Kei-ichi, Padhorny, Dzmitry, Skolnick, Jeffrey, Sosnick, Tobin R., Stan, George, Vakser, Ilya, Zou, Xiaoqin, Rose, George D.
Published in Proceedings of the National Academy of Sciences - PNAS (03.01.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (03.01.2023)
Get full text
Journal Article
Unveiling interatomic distances influencing the reaction coordinates in alanine dipeptide isomerization: An explainable deep learning approach
Okada, Kazushi, Kikutsuji, Takuma, Okazaki, Kei-Ichi, Mori, Toshifumi, Kim, Kang, Matubayasi, Nobuyuki
Published in The Journal of chemical physics (07.05.2024)
Published in The Journal of chemical physics (07.05.2024)
Get more information
Journal Article
Explaining reaction coordinates of alanine dipeptide isomerization obtained from deep neural networks using Explainable Artificial Intelligence (XAI)
Kikutsuji, Takuma, Mori, Yusuke, Okazaki, Kei-ichi, Mori, Toshifumi, Kim, Kang, Matubayasi, Nobuyuki
Published in The Journal of chemical physics (21.04.2022)
Published in The Journal of chemical physics (21.04.2022)
Get full text
Journal Article
Multiple-Basin Energy Landscapes for Large-Amplitude Conformational Motions of Proteins: Structure-Based Molecular Dynamics Simulations
Okazaki, Kei-ichi, Koga, Nobuyasu, Takada, Shoji, Onuchic, Jose N., Wolynes, Peter G.
Published in Proceedings of the National Academy of Sciences - PNAS (08.08.2006)
Published in Proceedings of the National Academy of Sciences - PNAS (08.08.2006)
Get full text
Journal Article
F₁-ATPase conformational cycle from simultaneous single-molecule FRET and rotation measurements
Sugawa, Mitsuhiro, Okazaki, Kei-ichi, Kobayashi, Masaru, Matsui, Takashi, Hummer, Gerhard, Masaike, Tomoko, Nishizaka, Takayuki
Published in Proceedings of the National Academy of Sciences - PNAS (24.05.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (24.05.2016)
Get full text
Journal Article
Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota
Jaunet-Lahary, Titouan, Shimamura, Tatsuro, Hayashi, Masahiro, Nomura, Norimichi, Hirasawa, Kouta, Shimizu, Tetsuya, Yamashita, Masao, Tsutsumi, Naotaka, Suehiro, Yuta, Kojima, Keiichi, Sudo, Yuki, Tamura, Takashi, Iwanari, Hiroko, Hamakubo, Takao, Iwata, So, Okazaki, Kei-ichi, Hirai, Teruhisa, Yamashita, Atsuko
Published in Nature communications (03.04.2023)
Published in Nature communications (03.04.2023)
Get full text
Journal Article
Molecular Design of FRET Probes Based on Domain Rearrangement of Protein Disulfide Isomerase for Monitoring Intracellular Redox Status
Yagi-Utsumi, Maho, Miura, Haruko, Ganser, Christian, Watanabe, Hiroki, Hiranyakorn, Methanee, Satoh, Tadashi, Uchihashi, Takayuki, Kato, Koichi, Okazaki, Kei-ichi, Aoki, Kazuhiro
Published in International journal of molecular sciences (01.08.2023)
Published in International journal of molecular sciences (01.08.2023)
Get full text
Journal Article