KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
Aramaki, Takuya, Blanc-Mathieu, Romain, Endo, Hisashi, Ohkubo, Koichi, Kanehisa, Minoru, Goto, Susumu, Ogata, Hiroyuki
Published in Bioinformatics (01.04.2020)
Published in Bioinformatics (01.04.2020)
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Journal Article
Type III Polyketide Synthases: Functional Classification and Phylogenomics
Shimizu, Yugo, Ogata, Hiroyuki, Goto, Susumu
Published in Chembiochem : a European journal of chemical biology (03.01.2017)
Published in Chembiochem : a European journal of chemical biology (03.01.2017)
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Journal Article
Tara Oceans: towards global ocean ecosystems biology
Sunagawa, Shinichi, Acinas, Silvia G, Bork, Peer, Bowler, Chris, Eveillard, Damien, Gorsky, Gabriel, Guidi, Lionel, Iudicone, Daniele, Karsenti, Eric, Lombard, Fabien, Ogata, Hiroyuki, Pesant, Stephane, Sullivan, Matthew B, Wincker, Patrick, de Vargas, Colomban
Published in Nature reviews. Microbiology (01.08.2020)
Published in Nature reviews. Microbiology (01.08.2020)
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Journal Article
Eukaryotic plankton diversity in the sunlit ocean
de Vargas, C., Audic, S., Henry, N., Decelle, J., Mahé, F., Logares, R., Lara, E., Berney, C., Le Bescot, N., Probert, I., Carmichael, M., Poulain, J., Romac, S., Colin, S., Aury, J.-M., Bittner, L., Chaffron, S., Dunthorn, M., Engelen, S., Flegontova, O., Guidi, L., Horák, A., Jaillon, O., Lima-Mendez, G., Lukeš, J., Malviya, S., Morard, R., Mulot, M., Scalco, E., Siano, R., Vincent, F., Zingone, A., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Acinas, S. G., Bork, P., Bowler, C., Gorsky, G., Grimsley, N., Hingamp, P., Iudicone, D., Not, F., Ogata, H., Pesant, S., Raes, J., Sieracki, M. E., Speich, S., Stemmann, L., Sunagawa, S., Weissenbach, J., Wincker, P., Karsenti, E.
Published in Science (American Association for the Advancement of Science) (22.05.2015)
Published in Science (American Association for the Advancement of Science) (22.05.2015)
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Linking Virus Genomes with Host Taxonomy
Mihara, Tomoko, Nishimura, Yosuke, Shimizu, Yugo, Nishiyama, Hiroki, Yoshikawa, Genki, Uehara, Hideya, Hingamp, Pascal, Goto, Susumu, Ogata, Hiroyuki
Published in Viruses (01.03.2016)
Published in Viruses (01.03.2016)
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Journal Article
A rapid genome‐wide analysis of isolated giant viruses using MinION sequencing
Hikida, Hiroyuki, Okazaki, Yusuke, Zhang, Ruixuan, Nguyen, Thi Tuyen, Ogata, Hiroyuki
Published in Environmental microbiology (01.11.2023)
Published in Environmental microbiology (01.11.2023)
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Journal Article
Giant Viruses Encode Actin-Related Proteins
Da Cunha, Violette, Gaia, Morgan, Ogata, Hiroyuki, Jaillon, Olivier, Delmont, Tom O, Forterre, Patrick
Published in Molecular biology and evolution (01.02.2022)
Published in Molecular biology and evolution (01.02.2022)
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Journal Article
Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing
Massana, Ramon, Gobet, Angélique, Audic, Stéphane, Bass, David, Bittner, Lucie, Boutte, Christophe, Chambouvet, Aurélie, Christen, Richard, Claverie, Jean-Michel, Decelle, Johan, Dolan, John R., Dunthorn, Micah, Edvardsen, Bente, Forn, Irene, Forster, Dominik, Guillou, Laure, Jaillon, Olivier, Kooistra, Wiebe H. C. F., Logares, Ramiro, Mahé, Frédéric, Not, Fabrice, Ogata, Hiroyuki, Pawlowski, Jan, Pernice, Massimo C., Probert, Ian, Romac, Sarah, Richards, Thomas, Santini, Sébastien, Shalchian-Tabrizi, Kamran, Siano, Raffaele, Simon, Nathalie, Stoeck, Thorsten, Vaulot, Daniel, Zingone, Adriana, de Vargas, Colomban
Published in Environmental microbiology (01.10.2015)
Published in Environmental microbiology (01.10.2015)
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Journal Article
Patterns of Rare and Abundant Marine Microbial Eukaryotes
Logares, Ramiro, Audic, Stéphane, Bass, David, Bittner, Lucie, Boutte, Christophe, Christen, Richard, Claverie, Jean-Michel, Decelle, Johan, Dolan, John R., Dunthorn, Micah, Edvardsen, Bente, Gobet, Angélique, Kooistra, Wiebe H.C.F., Mahé, Frédéric, Not, Fabrice, Ogata, Hiroyuki, Pawlowski, Jan, Pernice, Massimo C., Romac, Sarah, Shalchian-Tabrizi, Kamran, Simon, Nathalie, Stoeck, Thorsten, Santini, Sébastien, Siano, Raffaele, Wincker, Patrick, Zingone, Adriana, Richards, Thomas A., de Vargas, Colomban, Massana, Ramon
Published in Current biology (14.04.2014)
Published in Current biology (14.04.2014)
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Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
Logares, Ramiro, Sunagawa, Shinichi, Salazar, Guillem, Cornejo‐Castillo, Francisco M, Ferrera, Isabel, Sarmento, Hugo, Hingamp, Pascal, Ogata, Hiroyuki, Vargas, Colomban, Lima‐Mendez, Gipsi, Raes, Jeroen, Poulain, Julie, Jaillon, Olivier, Wincker, Patrick, Kandels‐Lewis, Stefanie, Karsenti, Eric, Bork, Peer, Acinas, Silvia G
Published in Environmental microbiology (01.09.2014)
Published in Environmental microbiology (01.09.2014)
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Journal Article
Functional Differentiation among the Arabidopsis Phosphatidylinositol 4-Phosphate 5-Kinase Genes PIP5K1, PIP5K2 and PIP5K3
Watari, Machiko, Kato, Mariko, Blanc-Mathieu, Romain, Tsuge, Tomohiko, Ogata, Hiroyuki, Aoyama, Takashi
Published in Plant and cell physiology (16.05.2022)
Published in Plant and cell physiology (16.05.2022)
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Journal Article
The complete genomic sequence of the novel myovirus RP13 infecting Ralstonia solanacearum, the causative agent of bacterial wilt
Kawasaki, Takeru, Endo, Hisashi, Ogata, Hiroyuki, Chatchawankanphanich, Orawan, Yamada, Takashi
Published in Archives of virology (01.02.2021)
Published in Archives of virology (01.02.2021)
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Journal Article
MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes
Arai, Wataru, Taniguchi, Takeaki, Goto, Susumu, Moriya, Yuki, Uehara, Hideya, Takemoto, Kazuhiro, Ogata, Hiroyuki, Takami, Hideto
Published in Bioscience, biotechnology, and biochemistry (02.09.2018)
Published in Bioscience, biotechnology, and biochemistry (02.09.2018)
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Journal Article
Diversity and ecological footprint of Global Ocean RNA viruses
Dominguez-Huerta, Guillermo, Zayed, Ahmed A, Wainaina, James M, Guo, Jiarong, Tian, Funing, Pratama, Akbar Adjie, Bolduc, Benjamin, Mohssen, Mohamed, Zablocki, Olivier, Pelletier, Eric, Delage, Erwan, Alberti, Adriana, Aury, Jean-Marc, Carradec, Quentin, da Silva, Corinne, Labadie, Karine, Poulain, Julie, Bowler, Chris, Eveillard, Damien, Guidi, Lionel, Karsenti, Eric, Kuhn, Jens H, Ogata, Hiroyuki, Wincker, Patrick, Culley, Alexander, Chaffron, Samuel, Sullivan, Matthew B
Published in Science (American Association for the Advancement of Science) (10.06.2022)
Published in Science (American Association for the Advancement of Science) (10.06.2022)
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