COMPARTMENTS: unification and visualization of protein subcellular localization evidence
Binder, Janos X, Pletscher-Frankild, Sune, Tsafou, Kalliopi, Stolte, Christian, O'Donoghue, Seán I, Schneider, Reinhard, Jensen, Lars Juhl
Published in Database : the journal of biological databases and curation (25.02.2014)
Published in Database : the journal of biological databases and curation (25.02.2014)
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Journal Article
SnapShot: Phosphoregulation of Mitosis
Burgess, Andrew, Vuong, Jenny, Rogers, Samuel, Malumbres, Marcos, O’Donoghue, Seán I.
Published in Cell (15.06.2017)
Published in Cell (15.06.2017)
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Journal Article
Comprehensive comparison of large-scale tissue expression datasets
Santos, Alberto, Tsafou, Kalliopi, Stolte, Christian, Pletscher-Frankild, Sune, O'Donoghue, Seán I, Jensen, Lars Juhl
Published in PeerJ (San Francisco, CA) (30.06.2015)
Published in PeerJ (San Francisco, CA) (30.06.2015)
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Journal Article
Visualization and Analysis of Epiproteome Dynamics
Kaur, Sandeep, Baldi, Benedetta, Vuong, Jenny, O'Donoghue, Seán I.
Published in Journal of molecular biology (05.04.2019)
Published in Journal of molecular biology (05.04.2019)
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Journal Article
Dark Proteins Important for Cellular Function
Schafferhans, Andrea, O'Donoghue, Seán I., Heinzinger, Michael, Rost, Burkhard
Published in Proteomics (Weinheim) (01.11.2018)
Published in Proteomics (Weinheim) (01.11.2018)
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Journal Article
SnapShot: S-Phase Entry and Exit
Burgess, Andrew, Vuong, Jenny, Marzec, Kamila A., Nicolai de Lichtenberg, Ulrik, O’Donoghue, Seán I., Jensen, Lars Juhl
Published in Cell (17.10.2019)
Published in Cell (17.10.2019)
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Journal Article
SnapShot: Insulin/IGF1 Signaling
Ma, David K.G., Stolte, Christian, Krycer, James R., James, David E., O’Donoghue, Seán I.
Published in Cell (07.05.2015)
Published in Cell (07.05.2015)
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Journal Article
How to learn about gene function: text-mining or ontologies?
Soldatos, Theodoros G., Perdigão, Nelson, Brown, Nigel P., Sabir, Kenneth S., O’Donoghue, Seán I.
Published in Methods (San Diego, Calif.) (01.03.2015)
Published in Methods (San Diego, Calif.) (01.03.2015)
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Journal Article
Visualization of Biomedical Data
O'Donoghue, Seán I, Baldi, Benedetta Frida, Clark, Susan J, Darling, Aaron E, Hogan, James M, Kaur, Sandeep, Maier-Hein, Lena, McCarthy, Davis J, Moore, William J, Stenau, Esther, Swedlow, Jason R, Vuong, Jenny, Procter, James B
Published in Annual review of biomedical data science (20.07.2018)
Published in Annual review of biomedical data science (20.07.2018)
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Journal Article
Text mining for biology--the way forward: opinions from leading scientists
Altman, Russ B, Bergman, Casey M, Blake, Judith, Blaschke, Christian, Cohen, Aaron, Gannon, Frank, Grivell, Les, Hahn, Udo, Hersh, William, Hirschman, Lynette, Jensen, Lars Juhl, Krallinger, Martin, Mons, Barend, O'Donoghue, Seán I, Peitsch, Manuel C, Rebholz-Schuhmann, Dietrich, Shatkay, Hagit, Valencia, Alfonso
Published in Genome biology (01.01.2008)
Published in Genome biology (01.01.2008)
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Journal Article
Defective lamin A-Rb signaling in Hutchinson-Gilford Progeria Syndrome and reversal by farnesyltransferase inhibition
Marji, Jackleen, O'Donoghue, Seán I, McClintock, Dayle, Satagopam, Venkata P, Schneider, Reinhard, Ratner, Desiree, Worman, Howard J, Gordon, Leslie B, Djabali, Karima
Published in PloS one (15.06.2010)
Published in PloS one (15.06.2010)
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Journal Article
Unexpected features of the dark proteome
Perdigão, Nelson, Heinrich, Julian, Stolte, Christian, Sabir, Kenneth S., Buckley, Michael J., Tabor, Bruce, Signal, Beth, Gloss, Brian S., Hammang, Christopher J., Rost, Burkhard, Schafferhans, Andrea, O’Donoghue, Seán I.
Published in Proceedings of the National Academy of Sciences - PNAS (29.12.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (29.12.2015)
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Journal Article
Visualization of omics data for systems biology
O'Donoghue, Seán I, Gehlenborg, Nils, Baliga, Nitin S, Goesmann, Alexander, Hibbs, Matthew A, Kitano, Hiroaki, Kohlbacher, Oliver, Neuweger, Heiko, Schneider, Reinhard, Tenenbaum, Dan, Gavin, Anne-Claude
Published in Nature methods (01.03.2010)
Published in Nature methods (01.03.2010)
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Journal Article
Reflect: A practical approach to web semantics
O’Donoghue, Seán I., Horn, Heiko, Pafilis, Evangelos, Haag, Sven, Kuhn, Michael, Satagopam, Venkata P., Schneider, Reinhard, Jensen, Lars J.
Published in Web semantics (01.07.2010)
Published in Web semantics (01.07.2010)
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Journal Article
Caipirini: using gene sets to rank literature
Soldatos, Theodoros G, O'Donoghue, Seán I, Satagopam, Venkata P, Barbosa-Silva, Adriano, Pavlopoulos, Georgios A, Wanderley-Nogueira, Ana Carolina, Soares-Cavalcanti, Nina Mota, Schneider, Reinhard
Published in BioData mining (01.02.2012)
Published in BioData mining (01.02.2012)
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Journal Article
SARS‐CoV‐2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms
O’Donoghue, Seán I, Schafferhans, Andrea, Sikta, Neblina, Stolte, Christian, Kaur, Sandeep, Ho, Bosco K, Anderson, Stuart, Procter, James B, Dallago, Christian, Bordin, Nicola, Adcock, Matt, Rost, Burkhard
Published in Molecular systems biology (01.09.2021)
Published in Molecular systems biology (01.09.2021)
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