Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples
O'Brien, Caoimhe E, Oliveira-Pacheco, João, Ó Cinnéide, Eoin, Haase, Max A B, Hittinger, Chris Todd, Rogers, Thomas R, Zaragoza, Oscar, Bond, Ursula, Butler, Geraldine
Published in PLoS pathogens (31.03.2021)
Published in PLoS pathogens (31.03.2021)
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Journal Article
Genome analysis of the yeast Diutina catenulata, a member of the Debaryomycetaceae/Metschnikowiaceae (CTG-Ser) clade
O'Brien, Caoimhe E, McCarthy, Charley G P, Walshe, Annie E, Shaw, Dennis R, Sumski, Deirdre A, Krassowski, Tadeusz, Fitzpatrick, David A, Butler, Geraldine
Published in PloS one (26.06.2018)
Published in PloS one (26.06.2018)
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Journal Article
Spatial inter-centromeric interactions facilitated the emergence of evolutionary new centromeres
Guin, Krishnendu, Chen, Yao, Mishra, Radha, Muzaki, Siti Rawaidah Bm, Thimmappa, Bhagya C, O'Brien, Caoimhe E, Butler, Geraldine, Sanyal, Amartya, Sanyal, Kaustuv
Published in eLife (29.05.2020)
Published in eLife (29.05.2020)
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Journal Article
Coverage-Versus-Length Plots, a Simple Quality Control Step for de Novo Yeast Genome Sequence Assemblies
Douglass, Alexander P, O'Brien, Caoimhe E, Offei, Benjamin, Coughlan, Aisling Y, Ortiz-Merino, Raúl A, Butler, Geraldine, Byrne, Kevin P, Wolfe, Kenneth H
Published in G3 : genes - genomes - genetics (01.03.2019)
Published in G3 : genes - genomes - genetics (01.03.2019)
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Journal Article
Identification of a novel Candida metapsilosis isolate reveals multiple hybridization events
O'Brien, Caoimhe E, Zhai, Bing, Ola, Mihaela, Bergin, Sean A, Ó Cinnéide, Eoin, O'Connor, Ísla, Rolling, Thierry, Miranda, Edwin, Babady, N Esther, Hohl, Tobias M, Butler, Geraldine
Published in G3 : genes - genomes - genetics (01.01.2022)
Published in G3 : genes - genomes - genetics (01.01.2022)
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Journal Article
Draft Genome Sequence of a Highly Heterozygous Yeast Strain from the Metschnikowia pulcherrima Subclade, UCD127
Venkatesh, Anjan, Murray, Anthony L, Boyle, Adrian B, Quinn Farrington, Lisa, Maher, Timothy J, Ó'Gaora, Peadar, Wolfe, Kenneth H, O'Brien, Caoimhe E, Butler, Geraldine
Published in Genome announcements (Washington, DC) (21.06.2018)
Published in Genome announcements (Washington, DC) (21.06.2018)
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Journal Article
Draft Genome Sequences of Two Isolates of the Yeast Kazachstania servazzii Recovered from Soil in Ireland
Faherty, Lynne, Lewis, Clifton, McElheron, Matt, Garvey, Niall, Duggan, Róisín, Shovlin, Ben, Ó Cróinín, Tadhg, Byrne, Kevin P, O'Brien, Caoimhe E, Wolfe, Kenneth H, Butler, Geraldine
Published in Microbiology resource announcements (31.10.2019)
Published in Microbiology resource announcements (31.10.2019)
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Journal Article
Draft Genome Sequence of the Birch Tree Fungal Pathogen Taphrina betulina UCD315
Heneghan, Padraic, Ryan, Adam P, Nimmo, Darragh, Duggan, Claudine, Kumar, Paurush, O'Gaora, Peadar, Ó 'Cinnéide, Eoin, Byrne, Kevin P, Wolfe, Kenneth H, O'Brien, Caoimhe E, Butler, Geraldine
Published in Microbiology resource announcements (27.11.2019)
Published in Microbiology resource announcements (27.11.2019)
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Journal Article
Draft Genome Sequence of the Yeast Nadsonia starkeyi-henricii UCD142, Isolated from Forest Soil in Ireland
O'Boyle, Sinéad, Bergin, Sean A, Hussey, Éabha E, McLaughlin, Aaron D, Riddell, Luan R, Byrne, Kevin P, Wolfe, Kenneth H, O'Brien, Caoimhe E, Butler, Geraldine
Published in Genome announcements (Washington, DC) (21.06.2018)
Published in Genome announcements (Washington, DC) (21.06.2018)
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Journal Article
Draft Genome Sequences of Two Natural Isolates of the Yeast Barnettozyma californica from Ireland, UCD09 and UCD89
Mullen, Alisha A, Lynch, Ciara D, Hill, Shannon M, Holohan, Cian P, Ó Cróinín, Tadhg, Wolfe, Kenneth H, O'Brien, Caoimhe E, Butler, Geraldine
Published in Genome announcements (Washington, DC) (21.06.2018)
Published in Genome announcements (Washington, DC) (21.06.2018)
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Journal Article
Polymorphic centromere locations in the pathogenic yeast Candida parapsilosis
Ola, Mihaela, O'Brien, Caoimhe E, Coughlan, Aisling Y, Ma, Qinxi, Donovan, Paul D, Wolfe, Kenneth H, Butler, Geraldine
Published in Genome research (01.05.2020)
Published in Genome research (01.05.2020)
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Journal Article
Draft Genome Sequence of the Yeast Kazachstania telluris CBS 16338 Isolated from Forest Soil in Ireland
Morio, Florent, O’Brien, Caoimhe E., Butler, Geraldine
Published in Mycopathologia (1975) (01.06.2020)
Published in Mycopathologia (1975) (01.06.2020)
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Journal Article
Draft Genome Sequence of a Red Basidiomycete Yeast, Symmetrospora coprosmae Strain UCD350, Isolated from Soil in Ireland
Almasoud, Jameela, McArdle, Laoise, Henne, Ryan, Mathews, Karen, O'Connor, Ísla, McLoughlin, Leah E, Ó'Gaora, Peadar, Byrne, Kevin P, O'Brien, Caoimhe E, Wolfe, Kenneth H, Butler, Geraldine
Published in Microbiology resource announcements (31.10.2019)
Published in Microbiology resource announcements (31.10.2019)
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Journal Article
Genome analysis of the yeast Diutina catenulata, a member of the Debaryomycetaceae/Metschnikowiaceae
O'Brien, Caoimhe E, McCarthy, Charley G. P, Walshe, Annie E, Shaw, Dennis R, Sumski, Deirdre A, Krassowski, Tadeusz, Fitzpatrick, David A, Butler, Geraldine
Published in PloS one (26.06.2018)
Published in PloS one (26.06.2018)
Get full text
Journal Article
Coverage-Versus-Length Plots, a Simple Quality Control Step for de Novo Yeast Genome Sequence Assemblies
Douglass, Alexander P, O'Brien, Caoimhe E, Offei, Benjamin, Coughlan, Aisling Y, Ortiz-Merino, Raúl A, Butler, Geraldine, Byrne, Kevin P, Wolfe, Kenneth H
Published in G3 : genes - genomes - genetics (01.03.2019)
Get full text
Published in G3 : genes - genomes - genetics (01.03.2019)
Journal Article
Spatial inter-centromeric interactions facilitated the emergence of evolutionary new centromeres
Guin, Krishnendu, Chen, Yao, Mishra, Radha, Siti Rawaidah Bm Muzaki, Thimmappa, Bhagya C, O'brien, Caoimhe E, Butler, Geraldine, Sanyal, Amartya, Sanyal, Kaustuv
Published in bioRxiv (07.05.2020)
Published in bioRxiv (07.05.2020)
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Paper
Coverage-versus-Length plots, a simple quality control step for de novo yeast genome sequence assemblies
Douglass, Alexander P, O'brien, Caoimhe E, Offei, Benjamin, Coughlan, Aisling Y, Ra l A Ortiz-Merino, Butler, Geraldine, Byrne, Kevin P, Wolfe, Kenneth H
Published in bioRxiv (19.09.2018)
Published in bioRxiv (19.09.2018)
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Paper
Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples
Caoimhe E O’brien, Oliveira-Pacheco, João, Eoin Ó Cinnéide, Hasse, Max A B, Hittinger, Chris Todd, Rogers, Thomas R, Zaragoza, Oscar, Bond, Ursula, Butler, Geraldine
Published in bioRxiv (26.11.2020)
Published in bioRxiv (26.11.2020)
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Paper