Monkeypox: another test for PCR
Huggett, Jim F, French, David, O'Sullivan, Denise M, Moran-Gilad, Jacob, Zumla, Alimuddin
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (11.08.2022)
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (11.08.2022)
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The Dangers of Using Cq to Quantify Nucleic Acid in Biological Samples: A Lesson From COVID-19
Evans, Daniel, Cowen, Simon, Kammel, Martin, O’Sullivan, Denise M, Stewart, Graham, Grunert, Hans-Peter, Moran-Gilad, Jacob, Verwilt, Jasper, In, Jiwon, Vandesompele, Jo, Harris, Kathryn, Hong, Ki Ho, Storey, Nathaniel, Hingley-Wilson, Suzie, Dühring, Ulf, Bae, Young-Kyung, Foy, Carole A, Braybrook, Julian, Zeichhardt, Heinz, Huggett, Jim F
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Published in Clinical chemistry (Baltimore, Md.) (01.01.2022)
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Rapid detection of Mycobacterium tuberculosis by recombinase polymerase amplification
Boyle, David S, McNerney, Ruth, Teng Low, Hwee, Leader, Brandon Troy, Pérez-Osorio, Ailyn C, Meyer, Jessica C, O'Sullivan, Denise M, Brooks, David G, Piepenburg, Olaf, Forrest, Matthew S
Published in PloS one (13.08.2014)
Published in PloS one (13.08.2014)
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RNA reference materials with defined viral RNA loads of SARS-CoV-2-A useful tool towards a better PCR assay harmonization
Vierbaum, Laura, Wojtalewicz, Nathalie, Grunert, Hans-Peter, Lindig, Vanessa, Duehring, Ulf, Drosten, Christian, Corman, Victor, Niemeyer, Daniela, Ciesek, Sandra, Rabenau, Holger F, Berger, Annemarie, Obermeier, Martin, Nitsche, Andreas, Michel, Janine, Mielke, Martin, Huggett, Jim, O'Sullivan, Denise, Busby, Eloise, Cowen, Simon, Vallone, Peter M, Cleveland, Megan H, Falak, Samreen, Kummrow, Andreas, Keller, Thomas, Schellenberg, Ingo, Zeichhardt, Heinz, Kammel, Martin
Published in PloS one (20.01.2022)
Published in PloS one (20.01.2022)
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Results of German external quality assessment schemes for SARS-CoV-2 antigen detection
Vierbaum, Laura, Wojtalewicz, Nathalie, Grunert, Hans-Peter, Zimmermann, Anika, Scholz, Annemarie, Goseberg, Sabine, Kaiser, Patricia, Duehring, Ulf, Drosten, Christian, Corman, Victor, Niemeyer, Daniela, Rabenau, Holger F., Obermeier, Martin, Nitsche, Andreas, Michel, Janine, Puyskens, Andreas, Huggett, Jim F., O’Sullivan, Denise M., Busby, Eloise, Cowen, Simon, Vallone, Peter M., Cleveland, Megan H., Falak, Samreen, Kummrow, Andreas, Schellenberg, Ingo, Zeichhardt, Heinz, Kammel, Martin
Published in Scientific reports (14.08.2023)
Published in Scientific reports (14.08.2023)
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An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities
O’Sullivan, Denise M., Doyle, Ronan M., Temisak, Sasithon, Redshaw, Nicholas, Whale, Alexandra S., Logan, Grace, Huang, Jiabin, Fischer, Nicole, Amos, Gregory C. A., Preston, Mark D., Marchesi, Julian R., Wagner, Josef, Parkhill, Julian, Motro, Yair, Denise, Hubert, Finn, Robert D., Harris, Kathryn A., Kay, Gemma L., O’Grady, Justin, Ransom-Jones, Emma, Wu, Huihai, Laing, Emma, Studholme, David J., Benavente, Ernest Diez, Phelan, Jody, Clark, Taane G., Moran-Gilad, Jacob, Huggett, Jim F.
Published in Scientific reports (19.05.2021)
Published in Scientific reports (19.05.2021)
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The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs
Phelan, Jody, O'Sullivan, Denise M, Machado, Diana, Ramos, Jorge, Whale, Alexandra S, O'Grady, Justin, Dheda, Keertan, Campino, Susana, McNerney, Ruth, Viveiros, Miguel, Huggett, Jim F, Clark, Taane G
Published in Genome medicine (22.12.2016)
Published in Genome medicine (22.12.2016)
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Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing
Clark, Taane G, Mallard, Kim, Coll, Francesc, Preston, Mark, Assefa, Samuel, Harris, David, Ogwang, Sam, Mumbowa, Francis, Kirenga, Bruce, O'Sullivan, Denise M, Okwera, Alphonse, Eisenach, Kathleen D, Joloba, Moses, Bentley, Stephen D, Ellner, Jerrold J, Parkhill, Julian, Jones-López, Edward C, McNerney, Ruth
Published in PloS one (11.12.2013)
Published in PloS one (11.12.2013)
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Assessment of Digital PCR as a Primary Reference Measurement Procedure to Support Advances in Precision Medicine
Whale, Alexandra S, Jones, Gerwyn M, Pavšič, Jernej, Dreo, Tanja, Redshaw, Nicholas, Akyürek, Sema, Akgöz, Müslüm, Divieto, Carla, Sassi, Maria Paola, He, Hua-Jun, Cole, Kenneth D, Bae, Young-Kyung, Park, Sang-Ryoul, Deprez, Liesbet, Corbisier, Philippe, Garrigou, Sonia, Taly, Valérie, Larios, Raquel, Cowen, Simon, O'Sullivan, Denise M, Bushell, Claire A, Goenaga-Infante, Heidi, Foy, Carole A, Woolford, Alison J, Parkes, Helen, Huggett, Jim F, Devonshire, Alison S
Published in Clinical chemistry (Baltimore, Md.) (01.09.2018)
Published in Clinical chemistry (Baltimore, Md.) (01.09.2018)
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Comparison of SARS-CoV-2 N gene real-time RT-PCR targets and commercially available mastermixes
Brown, Julianne R., O’Sullivan, Denise M., Shah, Divya, Atkinson, Laura, Pereira, Rui P.A., Whale, Alexandra S., Busby, Eloise J., Huggett, Jim F., Harris, Kathryn
Published in Journal of virological methods (01.09.2021)
Published in Journal of virological methods (01.09.2021)
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An assessment of the reproducibility of reverse transcription digital PCR quantification of HIV-1
Falak, Samreen, Macdonald, Rainer, Busby, Eloise J., O'Sullivan, Denise M., Milavec, Mojca, Plauth, Annabell, Kammel, Martin, Zeichhardt, Heinz, Grunert, Hans-Peter, Kummrow, Andreas, Huggett, Jim F.
Published in Methods (San Diego, Calif.) (01.05.2022)
Published in Methods (San Diego, Calif.) (01.05.2022)
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Ensuring accuracy in the development and application of nucleic acid amplification tests (NAATs) for infectious disease
Huggett, Jim F., O'Sullivan, Denise M., Cowen, Simon, Cleveland, Megan H., Davies, Kerrie, Harris, Kathryn, Moran-Gilad, Jacob, Winter, Amanda, Braybrook, Julian, Messenger, Michael
Published in Molecular aspects of medicine (01.06.2024)
Published in Molecular aspects of medicine (01.06.2024)
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Journal Article
Low unspliced cell-associated HIV RNA in early treated adolescents living with HIV on long suppressive ART
Gärtner, Kathleen, Domínguez-Rodríguez, Sara, Heaney, Judith, Gkouleli, Triantafylia, Grant, Paul, Dorgham, Karim, Sauce, Delphine, Soulie, Cathia, Busby, Eloise J, O'Sullivan, Denise M, Spyer, Moira, Botha, Johannes C, Muñoz-Fernandez, Maria Angeles, Tagarro, Alfredo, Cotugno, Nicola, Huggett, Jim F, Klein, Nigel, Palma, Paolo, Rojo Conejo, Pablo, Foster, Caroline, Giaquinto, Carlo, Rossi, Paolo, Persaud, Deborah, De Rossi, Anita, Marcelin, Anne-Geneviève, Nastouli, Eleni
Published in Frontiers in immunology (20.02.2024)
Published in Frontiers in immunology (20.02.2024)
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Evaluation of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Molecular Typing of Acinetobacter baumannii in Comparison with Orthogonal Methods
Busby, Eloise J, Doyle, Ronan M, Leboreiro Babe, Clara, Harris, Kathryn A, Mack, Damien, Méndez-Cervantes, Gema, O'Sullivan, Denise M, Pang, Vicky, Sadouki, Zahra, Solanki, Priya, Huggett, Jim F, McHugh, Timothy D, Wey, Emmanuel Q
Published in Microbiology spectrum (15.06.2023)
Published in Microbiology spectrum (15.06.2023)
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Digital PCR can augment the interpretation of RT-qPCR Cq values for SARS-CoV-2 diagnostics
Whale, Alexandra S., von der Heide, Eva K., Kohlenberg, Max, Brinckmann, Anja, Baedker, Silke, Karalay, Oezlem, Fernandez-Gonzalez, Ana, Busby, Eloise J., Bustin, Stephen A., Hauser, Heiko, Missel, Andreas, O'Sullivan, Denise M., Huggett, Jim F., Pfaffl, Michael W., Nolan, Tania
Published in Methods (San Diego, Calif.) (01.05.2022)
Published in Methods (San Diego, Calif.) (01.05.2022)
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STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies
Bharucha, Tehmina, Oeser, Clarissa, Balloux, Francois, Brown, Julianne R, Carbo, Ellen C, Charlett, Andre, Chiu, Charles Y, Claas, Eric C J, de Goffau, Marcus C, de Vries, Jutte J C, Eloit, Marc, Hopkins, Susan, Huggett, Jim F, MacCannell, Duncan, Morfopoulou, Sofia, Nath, Avindra, O'Sullivan, Denise M, Reoma, Lauren B, Shaw, Liam P, Sidorov, Igor, Simner, Patricia J, Van Tan, Le, Thomson, Emma C, van Dorp, Lucy, Wilson, Michael R, Breuer, Judith, Field, Nigel
Published in The Lancet infectious diseases (01.10.2020)
Published in The Lancet infectious diseases (01.10.2020)
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Journal Article
Detection of Rare Drug Resistance Mutations by Digital PCR in a Human Influenza A Virus Model System and Clinical Samples
Whale, Alexandra S, Bushell, Claire A, Grant, Paul R, Cowen, Simon, Gutierrez-Aguirre, Ion, O'Sullivan, Denise M, Žel, Jana, Milavec, Mojca, Foy, Carole A, Nastouli, Eleni, Garson, Jeremy A, Huggett, Jim F
Published in Journal of clinical microbiology (01.02.2016)
Published in Journal of clinical microbiology (01.02.2016)
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Journal Article
The performance of human cytomegalovirus digital PCR reference measurement procedure in seven external quality assessment schemes over four years
Milavec, Mojca, Pavšič, Jernej, Bogožalec Košir, Alexandra, Jones, Gerwyn M., O'Sullivan, Denise M., Devonshire, Alison S., Van Heuverswyn, Fran, Karczmarczyk, Maria, Neeb, Jannika, Plauth, Annabell, Corbisier, Philippe, Schimmel, Heinz, Kummrow, Andreas, Neukammer, Jörg, Foy, Carole A., Kammel, Martin, Grunert, Hans-Peter, Zeichhardt, Heinz, Huggett, Jim F.
Published in Methods (San Diego, Calif.) (01.05.2022)
Published in Methods (San Diego, Calif.) (01.05.2022)
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Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study
Doyle, Ronan M, O'Sullivan, Denise M, Aller, Sean D, Bruchmann, Sebastian, Clark, Taane, Coello Pelegrin, Andreu, Cormican, Martin, Diez Benavente, Ernest, Ellington, Matthew J, McGrath, Elaine, Motro, Yair, Phuong Thuy Nguyen, Thi, Phelan, Jody, Shaw, Liam P, Stabler, Richard A, van Belkum, Alex, van Dorp, Lucy, Woodford, Neil, Moran-Gilad, Jacob, Huggett, Jim F, Harris, Kathryn A
Published in Microbial genomics (01.02.2020)
Published in Microbial genomics (01.02.2020)
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Journal Article
Assessing the Variability of Cell-Associated HIV DNA Quantification through a Multicenter Collaborative Study
Le Duff, Yann, Gärtner, Kathleen, Busby, Eloise J, Dalzini, Annalisa, Danaviah, Sivapragashini, Fuentes, José Luis Jiménez, Giaquinto, Carlo, Huggett, Jim F, Hurley, Matthew, Marcellin, Anne-Geneviève, Muñoz-Fernández, María Ángeles, O'Sullivan, Denise M, Persaud, Deborah, Powell, Laura, Rigsby, Peter, Rossi, Paolo, de Rossi, Anita, Siems, Lilly, Smit, Theresa, Watters, Sarah A, Almond, Neil, Nastouli, Eleni
Published in Microbiology spectrum (29.06.2022)
Published in Microbiology spectrum (29.06.2022)
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